Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 7e-21
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 58 9e-09
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23) 42 5e-04
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 42 8e-04
SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05) 36 0.054
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_16298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.1
>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 98.3 bits (234), Expect = 7e-21
Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 157 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 216
MR+LVA WMLEVCE+ C+EEVF L++++LDR LS+ V K Q+QLLG C+ +ASK++E
Sbjct: 1 MRKLVATWMLEVCEEERCEEEVFALSMNYLDRILSLLPVKKFQLQLLGAVCMFIASKMKE 60
Query: 217 PGSCALPADLLVFYTANSITLTDLCRNATVFIGKGTARQRVSLNEPSDFSEE 268
+ L A+ L YT NSIT +L + +GK + VS P DF ++
Sbjct: 61 --TSPLTAEKLCIYTDNSITTEELLDWELLVLGK--LKWDVSAVTPHDFLDQ 108
>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q +I MR ++ +W++EV E+ + L ++++DRFLS +V + ++QL+GTAC+L
Sbjct: 216 QPDINNSMRAILVDWLVEVAEEYKLLPQTLYLTVNYIDRFLSAMSVLRGKLQLVGTACML 275
Query: 210 LASKLRE 216
LASK E
Sbjct: 276 LASKFEE 282
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 58.0 bits (134), Expect = 9e-09
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 195
EE Y+V+ Y Q E+ MR ++ +W+++V +E + +S +DRFL++ V
Sbjct: 157 EEHYSVSPTYMNN-QQEVNEKMRAILLDWLVQVHLKFRLLQETLYITMSIIDRFLAVHQV 215
Query: 196 GKSQVQLLGTACLLLASKLRE 216
K ++QL+G +LLASK E
Sbjct: 216 SKRELQLVGVGAMLLASKYEE 236
>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
Length = 392
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q E+T MR ++ +W++EV E E L + LD +L V + +QL+G L
Sbjct: 202 QKELTISMRAILVDWLVEVQESFELYHETLYLGVRVLDNYLMRSYVERENLQLVGAVSLY 261
Query: 210 LASKL 214
+A K+
Sbjct: 262 IACKV 266
>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
Length = 279
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 157 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 216
+RR + +W+ + E G V LAI ++D F+ + +SQ+ LL LLLA+K E
Sbjct: 60 IRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFMDKFIIQESQLHLLALTALLLAAKFDE 119
>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
Length = 223
Score = 35.5 bits (78), Expect = 0.054
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 181 LAISFLDRFLSICAVGKSQVQLLGTACLLLASKLREPGS 219
L ++ +DR++S+ V + QLLG ACLL+A K + S
Sbjct: 82 LIVALVDRYMSLRTVPVAHFQLLGMACLLVACKYEDRAS 120
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 148 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSI 192
T EITP + W+ + +D + F L IS L+RFLS+
Sbjct: 40 TEGNEITPSIYSNTTRWIWLLNQDFEYLPDTFSLTISLLNRFLSL 84
>SB_16298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/66 (18%), Positives = 31/66 (46%)
Query: 189 FLSICAVGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCRNATVFI 248
F ++C ++ + + + + +CAL + L + + ++ +D+C + +F
Sbjct: 22 FYTLCVFVALEIVFFTKSAIFVYQGRKGRRTCALNSSLSISHPNTNVNSSDVCESQQLFA 81
Query: 249 GKGTAR 254
KG A+
Sbjct: 82 EKGIAK 87
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 22 TALPPRRAAPIILLCSVGGRVSHR-PLTATRALVVVATLRATLRRSLPTD 70
++ PP +A P LC+ G H+ L+ + V LRA RS+P D
Sbjct: 121 SSTPPAQALPNTTLCTAGNMSVHKVQLSKLLCAITVEILRA--NRSVPLD 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,667,367
Number of Sequences: 59808
Number of extensions: 360998
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 9
length of query: 301
length of database: 16,821,457
effective HSP length: 82
effective length of query: 219
effective length of database: 11,917,201
effective search space: 2609867019
effective search space used: 2609867019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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