GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
         (301 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   6.0  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           24   6.0  
EF065522-1|ABK59322.1|  255|Anopheles gambiae beta carbonic anhy...    23   8.0  

>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 45  RPLTATRALVVVATLRATLRRSLPTDQLSSTP 76
           RP T T   +   T  AT     PT   +S P
Sbjct: 109 RPTTTTTDWITTTTTEATTTTRFPTTTTTSAP 140


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 45  RPLTATRALVVVATLRATLRRSLPTDQLSSTP 76
           RP T T   +   T  AT     PT   +S P
Sbjct: 109 RPTTTTTDWITTTTTEATTTTRFPTTTTTSAP 140


>EF065522-1|ABK59322.1|  255|Anopheles gambiae beta carbonic
           anhydrase protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 240 LCRNATVFIGKGTARQRVSLNEPSDFSEEPP 270
           LC +A   + K    + + L++P  FS E P
Sbjct: 134 LCEHANTSLAKFQNLKEIGLDKPLIFSSETP 164


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,538
Number of Sequences: 2123
Number of extensions: 10442
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 301
length of database: 516,269
effective HSP length: 64
effective length of query: 237
effective length of database: 380,397
effective search space: 90154089
effective search space used: 90154089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)