Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
(301 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 70 2e-12
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 70 2e-12
Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical pr... 55 5e-08
U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein. 55 5e-08
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 54 1e-07
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 54 1e-07
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 54 1e-07
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 54 1e-07
Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein. 47 2e-05
AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical ... 43 3e-04
AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b prot... 42 4e-04
AF026213-1|AAB71309.1| 130|Caenorhabditis elegans Hypothetical ... 36 0.035
AC006648-6|AAP68938.1| 123|Caenorhabditis elegans Cyclin a prot... 35 0.082
Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical p... 30 2.3
Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical p... 30 2.3
U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein. 30 2.3
Z79605-3|CAB01905.1| 163|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF040660-3|AAC71146.1| 220|Caenorhabditis elegans Hypothetical ... 29 4.1
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 5.4
U56966-9|AAA98722.1| 686|Caenorhabditis elegans Amyloid precurs... 28 7.1
U56966-8|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 28 7.1
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 28 7.1
U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical pr... 28 9.4
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 195
EE +YF VQ ITP R +W+ +V ++ C +VF LA+S +DRF+S+ +
Sbjct: 83 EEALQPNYHYFTGVQENITPFHREQAIDWIYDVAKEENCDGDVFLLAVSLIDRFMSVQNI 142
Query: 196 GKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANS 234
K +Q++ L +ASKL+ P + A + +Y+ NS
Sbjct: 143 LKHDIQMIAGVALFIASKLKAPH--PMTASKIAYYSDNS 179
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 195
EE +YF VQ ITP R +W+ +V ++ C +VF LA+S +DRF+S+ +
Sbjct: 83 EEALQPNYHYFTGVQENITPFHREQAIDWIYDVAKEENCDGDVFLLAVSLIDRFMSVQNI 142
Query: 196 GKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANS 234
K +Q++ L +ASKL+ P + A + +Y+ NS
Sbjct: 143 LKHDIQMIAGVALFIASKLKAPH--PMTASKIAYYSDNS 179
>Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical
protein ZK507.6 protein.
Length = 485
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 149 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACL 208
+Q+++ MR ++ +W +V ++ Q+E F LA+S +DR LS+ + K + QL+GT +
Sbjct: 236 IQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVGTTSM 295
Query: 209 LLASKLRE 216
++A K E
Sbjct: 296 MIAVKYEE 303
>U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein.
Length = 485
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 149 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACL 208
+Q+++ MR ++ +W +V ++ Q+E F LA+S +DR LS+ + K + QL+GT +
Sbjct: 236 IQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVGTTSM 295
Query: 209 LLASKLRE 216
++A K E
Sbjct: 296 MIAVKYEE 303
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKSQVQLLGTACLLLASKLR 215
RR++ +WM+EVCE E F LA+ ++DR+L V QL+GTA L +A+K
Sbjct: 259 RRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALFIAAKYE 318
Query: 216 E--PGSC 220
E P C
Sbjct: 319 EIYPPKC 325
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKSQVQLLGTACLLLASKLR 215
RR++ +WM+EVCE E F LA+ ++DR+L V QL+GTA L +A+K
Sbjct: 262 RRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALFIAAKYE 321
Query: 216 E--PGSC 220
E P C
Sbjct: 322 EIYPPKC 328
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKSQVQLLGTACLLLASKLR 215
RR++ +WM+EVCE E F LA+ ++DR+L V QL+GTA L +A+K
Sbjct: 262 RRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALFIAAKYE 321
Query: 216 E--PGSC 220
E P C
Sbjct: 322 EIYPPKC 328
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKSQVQLLGTACLLLASKLR 215
RR++ +WM+EVCE E F LA+ ++DR+L V QL+GTA L +A+K
Sbjct: 262 RRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALFIAAKYE 321
Query: 216 E--PGSC 220
E P C
Sbjct: 322 EIYPPKC 328
>Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical
protein ZC168.4 protein.
Length = 361
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 152 EITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLA 211
E TP MRR++ +W+++V E L + LDR L K+ +QLLG + + +A
Sbjct: 104 EPTPKMRRILVDWLVQVHVRFHLTPETLHLTVFILDRMLQKKVTSKADLQLLGISAMFVA 163
Query: 212 SKLRE 216
SK E
Sbjct: 164 SKFEE 168
>U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein.
Length = 361
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 152 EITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLA 211
E TP MRR++ +W+++V E L + LDR L K+ +QLLG + + +A
Sbjct: 104 EPTPKMRRILVDWLVQVHVRFHLTPETLHLTVFILDRMLQKKVTSKADLQLLGISAMFVA 163
Query: 212 SKLRE 216
SK E
Sbjct: 164 SKFEE 168
>AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical
protein Y43E12A.1 protein.
Length = 317
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 153 ITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLAS 212
+ MRR++ +W+++V E L I LDR + V K++ QLLG A L +AS
Sbjct: 58 VNSKMRRILVDWLIQVHLRFHLTPETLHLTIFVLDRIIVKNIVSKAEFQLLGVAALFVAS 117
Query: 213 KLRE 216
K +
Sbjct: 118 KFED 121
>AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b protein
2.2 protein.
Length = 339
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 153 ITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLAS 212
+ MRR++ +W+++V E L I LDR + V K++ QLLG A L +AS
Sbjct: 80 VNSKMRRILVDWLVQVHLRFHLTPETLHLTIFVLDRIIVKNIVSKAEFQLLGVAALFVAS 139
Query: 213 KLRE 216
K +
Sbjct: 140 KFED 143
>AF026213-1|AAB71309.1| 130|Caenorhabditis elegans Hypothetical
protein F08F1.9 protein.
Length = 130
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 157 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 216
MR ++ +W + + + E LA+S +DR L + + K + QL+G + +A K E
Sbjct: 1 MRTILIDWFSDAVREYIFRNEAVHLAVSLVDRALPMFNINKMRFQLVGITSMRIAVKYEE 60
>AC006648-6|AAP68938.1| 123|Caenorhabditis elegans Cyclin a protein
2 protein.
Length = 123
Score = 34.7 bits (76), Expect = 0.082
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 157 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 216
MR ++ +W + + ++E LA S +DR L + + K + QL+G + +A K E
Sbjct: 1 MRTILIDWFSDAVREYISRKEAVHLAASLVDRALPMFNIDKMRFQLVGITSMRIAVKYEE 60
>Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical
protein T06E6.2b protein.
Length = 383
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 152 EITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFL-SICAVGKSQVQLLGTACLLL 210
E+ R ++ +WM+E+ E E A+ D +L V K+ +Q L + +
Sbjct: 136 EVDVKTRAILIDWMVEIQETFELNHETLYNAVKLTDMYLCKTKNVDKNTIQKLACVAIFI 195
Query: 211 ASKLRE 216
A+K E
Sbjct: 196 AAKYDE 201
>Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical
protein T06E6.2a protein.
Length = 384
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 152 EITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFL-SICAVGKSQVQLLGTACLLL 210
E+ R ++ +WM+E+ E E A+ D +L V K+ +Q L + +
Sbjct: 137 EVDVKTRAILIDWMVEIQETFELNHETLYNAVKLTDMYLCKTKNVDKNTIQKLACVAIFI 196
Query: 211 ASKLRE 216
A+K E
Sbjct: 197 AAKYDE 202
>U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 152 EITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFL-SICAVGKSQVQLLGTACLLL 210
E+ R ++ +WM+E+ E E A+ D +L V K+ +Q L + +
Sbjct: 138 EVDVKTRAILIDWMVEIQETFELNHETLYNAVKLTDMYLCKTKNVDKNTIQKLACVAIFI 197
Query: 211 ASKLRE 216
A+K E
Sbjct: 198 AAKYDE 203
>Z79605-3|CAB01905.1| 163|Caenorhabditis elegans Hypothetical
protein ZK678.3 protein.
Length = 163
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 175 QEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLR 215
Q+E F LA+S +D L + + K + QL+G+ +++ +K+R
Sbjct: 18 QKETFHLAVSLVDLALPMFNIDKMRFQLVGSTSMMI-TKIR 57
>AF040660-3|AAC71146.1| 220|Caenorhabditis elegans Hypothetical
protein W05G11.2 protein.
Length = 220
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 175 QEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLR 215
Q+E F LA+S +D L + + K + QL+G +++ +K+R
Sbjct: 61 QKEAFHLAVSLVDLALPMFIIDKMRFQLVGITSMMI-TKIR 100
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 252 TARQRVSLNEPSDFSEEPPNEVRVSIRPITGEPRRLFFSHDTTTHSPSRP 301
T Q+ S +P + PP E +S P T + R FS + T ++P
Sbjct: 452 TPTQKASSQDPIVQQDPPPKEPSISSEPTTTKKPRKSFSPGSATPKHTQP 501
>U56966-9|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 258 SLNEPSDFSEEPP-NEVRVSIRPITGEPRRLFFSHDTTTHSP 298
S + SD E+ E+RV I PI EP F+ HD SP
Sbjct: 570 STSSESDEDEDKNIKELRVDIEPIIDEPAS-FYRHDKLIQSP 610
>U56966-8|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 258 SLNEPSDFSEEPP-NEVRVSIRPITGEPRRLFFSHDTTTHSP 298
S + SD E+ E+RV I PI EP F+ HD SP
Sbjct: 568 STSSESDEDEDKNIKELRVDIEPIIDEPAS-FYRHDKLIQSP 608
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 258 SLNEPSDFSEEPP-NEVRVSIRPITGEPRRLFFSHDTTTHSP 298
S + SD E+ E+RV I PI EP F+ HD SP
Sbjct: 564 STSSESDEDEDKNIKELRVDIEPIIDEPAS-FYRHDKLIQSP 604
>U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical
protein T12C9.7 protein.
Length = 419
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 177 EVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 216
E L + LD+ L + +V K+ + L L++ASKL +
Sbjct: 179 EALHLGAALLDKCLDMMSVNKASLDELAAVTLVIASKLED 218
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,946,582
Number of Sequences: 27539
Number of extensions: 258857
Number of successful extensions: 525
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 24
length of query: 301
length of database: 12,573,161
effective HSP length: 81
effective length of query: 220
effective length of database: 10,342,502
effective search space: 2275350440
effective search space used: 2275350440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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