Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-li... 71 1e-12
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 70 2e-12
At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-li... 67 1e-11
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 66 2e-11
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 66 3e-11
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 63 3e-10
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 62 3e-10
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 62 6e-10
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 62 6e-10
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 61 8e-10
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 58 1e-08
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 56 4e-08
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [... 54 2e-07
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 52 4e-07
At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-l... 52 5e-07
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 pro... 52 5e-07
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 52 6e-07
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 50 3e-06
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [... 50 3e-06
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 50 3e-06
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 49 3e-06
At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl... 49 4e-06
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 43 2e-04
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 42 5e-04
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 41 9e-04
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c... 40 0.002
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 40 0.003
At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical... 36 0.044
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 35 0.077
At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;... 31 0.72
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 29 3.8
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin... 29 3.8
At5g04190.1 68418.m00407 phytochrome kinase substrate-related co... 29 5.0
At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit... 28 6.7
>At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 369
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/75 (38%), Positives = 51/75 (68%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 204 GTACLLLASKLREPG 218
G + +L+ASK E G
Sbjct: 177 GVSAMLIASKYEEIG 191
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 70.1 bits (164), Expect = 2e-12
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 143 ANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 202
ANY VQ +I P MR+++ +W++EV +D + L ++ +DRFLS + + ++QL
Sbjct: 191 ANYMELVQRDIDPDMRKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQL 250
Query: 203 LGTACLLLASKLREPGSCALPADLLVFYTANSIT 236
LG +C+L+ASK E A + F TAN+ T
Sbjct: 251 LGVSCMLIASKYEE--LSAPGVEEFCFITANTYT 282
>At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 370
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/73 (36%), Positives = 50/73 (68%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 204 GTACLLLASKLRE 216
G + +L+AS+ E
Sbjct: 177 GVSAMLIASRKYE 189
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 204 GTACLLLASKLRE 216
G + +L+ASK E
Sbjct: 184 GVSAMLIASKYEE 196
>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
from [Nicotiana tabacum] GI:1064931, [Catharanthus
roseus] GI:2190259; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 355
Score = 66.1 bits (154), Expect = 3e-11
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y +Q ++T +MR ++ +W++EV E+ + LA+S++DRFLS+ V K ++QLL
Sbjct: 107 DYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLL 166
Query: 204 GTACLLLASKLRE 216
G +L+ASK E
Sbjct: 167 GVTSMLIASKYEE 179
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 204 GTACLLLAS 212
G + +L+AS
Sbjct: 184 GVSAMLIAS 192
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 135 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 194
+E + +Y VQ ++ MR ++ +W++EV E+ E L ++++DR+LS
Sbjct: 205 SEAKKRPDVDYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNV 264
Query: 195 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANS 234
+ + ++QLLG AC+++A+K E CA + + T N+
Sbjct: 265 ISRQKLQLLGVACMMIAAKYEE--ICAPQVEEFCYITDNT 302
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 142 TANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQ 201
+ +Y VQ +I P MR ++ +W++EV E+ + L ++ +DRF+S + K ++Q
Sbjct: 191 STSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQKLQ 250
Query: 202 LLGTACLLLASKLREPGSCALPADLLVFYTANSIT 236
LLG C+L+ASK E + L + F T N+ T
Sbjct: 251 LLGITCMLIASKYEEISAPRL--EEFCFITDNTYT 283
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y +Q +ITP R ++ +W++EV E+ E L +S++DRFLS+ V + +QL+
Sbjct: 78 DYIEKIQEDITPSKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSLKMVNEHWLQLV 137
Query: 204 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCR 242
G + + +ASK E + + + TAN+ T D+ +
Sbjct: 138 GVSAMFIASKYEEKRRPKV--EDFCYITANTYTKQDVLK 174
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 61.3 bits (142), Expect = 8e-10
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
+Y Q+ I MR ++ +W++EV E+ E LA++++DR+L+ A+ K +QLL
Sbjct: 198 DYMERTQSSINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQNLQLL 257
Query: 204 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDL 240
G C+++A+K E C + + T N+ +L
Sbjct: 258 GVTCMMIAAKYEE--VCVPQVEDFCYITDNTYLRNEL 292
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 149 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACL 208
+QTE+ MR ++ +W+LEV E L ++ +DRFLS+ AV K ++QL+G + L
Sbjct: 205 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRELQLVGISAL 264
Query: 209 LLASKLRE 216
L+ASK E
Sbjct: 265 LIASKYEE 272
>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
protein [Arabidopsis thaliana] GI:509423
Length = 429
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 137 ERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVG 196
ER++ + Q +I+ MR ++ +W++EV + E L ++ +DRFLS AV
Sbjct: 184 ERFSCVPLDYMAQQFDISDKMRAILIDWLIEVHDKFELMNETLFLTVNLIDRFLSKQAVA 243
Query: 197 KSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDL 240
+ ++QL+G LLLA K E S + DL+V + + T TD+
Sbjct: 244 RKKLQLVGLVALLLACKYEEV-SVPIVEDLVVI-SDKAYTRTDV 285
>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276, cyclin [Medicago
sativa] GI:1050559; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 450
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
++ +Q ++T MR ++ +W++EV E+ + L + +D FL V + Q+QLL
Sbjct: 208 DFMERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLL 267
Query: 204 GTACLLLASKLRE 216
G C+L+ASK E
Sbjct: 268 GITCMLIASKYEE 280
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q EI MR ++ +W++EV E L ++ +DRFLS+ V + ++QL+G + LL
Sbjct: 183 QPEIDEKMRSILIDWLVEVHVKFDLSPETLYLTVNIIDRFLSLKTVPRRELQLVGVSALL 242
Query: 210 LASKLRE 216
+ASK E
Sbjct: 243 IASKYEE 249
>At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-like
cyclin (CYC1) identical to SP|P30183 G2/mitotic-specific
cyclin (B-like cyclin) {Arabidopsis thaliana}
Length = 428
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q +I MR ++ EW+++V E F L ++ LDRFLS+ V + ++QL+G + LL
Sbjct: 189 QPDINEKMRLILVEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKELQLVGLSALL 248
Query: 210 LASKLRE 216
+++K E
Sbjct: 249 MSAKYEE 255
>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1
protein [Petunia x hybrida] GI:6093215, B-type cyclin
[Nicotiana tabacum] GI:849074; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 387
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 135 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 194
T E +Y G+ Q EI MR ++ +W+++V E L I+ +DRFLS+
Sbjct: 140 TVEEEGGIKDYIGS-QPEINEKMRSILIDWLVDVHRKFELMPETLYLTINLVDRFLSLTM 198
Query: 195 VGKSQVQLLGTACLLLASKLRE 216
V + ++QLLG +L+A K E
Sbjct: 199 VHRRELQLLGLGAMLIACKYEE 220
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 195
E+ V NY Q ++ MR ++ +W++EV EE L I+ +DRFL++ +
Sbjct: 189 EKLSCVPPNYMDN-QQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQI 247
Query: 196 GKSQVQLLGTACLLLASKLRE 216
+ ++QL+G LLLA K E
Sbjct: 248 VRKKLQLVGVTALLLACKYEE 268
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 135 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 194
T ER++ + Q ++ MR ++ +W++EV + E L ++ +DRFLS
Sbjct: 181 TMERFSCVPVDYMMQQIDLNEKMRAILIDWLIEVHDKFDLINETLFLTVNLIDRFLSKQN 240
Query: 195 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVF----YTANSI 235
V + ++QL+G LLLA K E S + DL++ YT N +
Sbjct: 241 VMRKKLQLVGLVALLLACKYEEV-SVPVVEDLVLISDKAYTRNDV 284
>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 461
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 144 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 203
++ Q ++T MR ++ +W++EV E+ + L + +D FL V + ++QLL
Sbjct: 217 DFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRLQLL 276
Query: 204 GTACLLLASKLRE 216
G C+L+ASK E
Sbjct: 277 GITCMLIASKYEE 289
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 135 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 194
T E ++ + E++P R ++ W++EV E L + LDR+LS
Sbjct: 153 TAEALNPALGHYLSAHAEVSPVTRGILINWLIEVHFKFDLMHETLYLTMDLLDRYLSQVP 212
Query: 195 VGKSQVQLLGTACLLLASKLRE 216
+ K+++QL+G LLLASK +
Sbjct: 213 IHKNEMQLIGLTALLLASKYED 234
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 151 TEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL-GTACLL 209
T + P +R ++ +W+++ C D G Q+E L + LDRFLS + + +L G A L
Sbjct: 380 TGLIPRLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLSKGSFKSERTLILVGIASLT 439
Query: 210 LASKLRE 216
LA+++ E
Sbjct: 440 LATRIEE 446
>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
GI:780267 from (Medicago sativa); contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 431
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA- 194
E R V NY Q +I MR ++ +W++EV EE L I+ +DRFL++
Sbjct: 189 ECRSCVPPNYMEN-QHDINERMRGILFDWLIEVHYKFELMEETLYLTINLIDRFLAVHQH 247
Query: 195 VGKSQVQLLGTACLLLASKLREPGSCALP-ADLLVFYTANSITLTDL 240
+ + ++QL+G +LLA K E ++P D L+ + + T T++
Sbjct: 248 IARKKLQLVGVTAMLLACKYEE---VSVPVVDDLILISDKAYTRTEI 291
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSI--CAVGKSQV-QLLGTACLLLASKL 214
RR W+ + CE F LA+++LDRFLS+ GK + QLL ACL LA+K+
Sbjct: 78 RRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKI 137
Query: 215 RE 216
E
Sbjct: 138 EE 139
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 146 FGTVQTEITPHMRRLVA-EWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ----- 199
F T+ ++ T RL+A +W+L G Q + +AIS+ D FL +G +
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWA 118
Query: 200 VQLLGTACLLLASKLRE---PGSCALPADLLVFYTANSITLTDL 240
++LL ACL LA+K+ E PG P D + + I T+L
Sbjct: 119 MRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTEL 162
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 164 WMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKS-QVQLLGTACLLLASKLRE 216
W+ + CE+ LA+++LDRFLS+ + GK+ VQLL ACL LA+K+ E
Sbjct: 75 WIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEE 130
>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
cyclin [Arabidopsis thaliana] GI:1360646
Length = 504
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 149 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 202
+QTE+ MR ++ +W+LEV E L ++ +DRFL + AV K ++Q+
Sbjct: 295 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLYVKAVPKRELQV 348
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 157 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASK 213
+R +W+L+VC L++++LDRFL+ + K + QLL +CL LASK
Sbjct: 96 VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASK 155
Query: 214 LRE 216
+ E
Sbjct: 156 MEE 158
>At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical to
SP|P42751 Cyclin delta-1 {Arabidopsis thaliana}
Length = 339
Score = 35.5 bits (78), Expect = 0.044
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 136 EERYAVTAN-YFGTVQTE-ITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSIC 193
+ER+ V + Y QT + R W+L+V Q LA++++DRFL
Sbjct: 58 DERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYAR 117
Query: 194 AVGKSQ---VQLLGTACLLLASKLRE 216
+ ++ +QLL ACL LA+K+ E
Sbjct: 118 RLPETSGWPMQLLAVACLSLAAKMEE 143
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 34.7 bits (76), Expect = 0.077
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 214
R+ W+L V G LAI++LD+F+ ++ + + +QL+ ACL LA+K+
Sbjct: 87 RKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKV 146
Query: 215 RE 216
E
Sbjct: 147 EE 148
>At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;2
[Lycopersicon esculentum] GI:6434199 ; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 302
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 3/40 (7%)
Query: 181 LAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKLREP 217
LA+++LDRFLS + +S+ ++L+ +C+ L++K+R+P
Sbjct: 80 LAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKP 119
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 214
R+ +W+L V G LA+++ DRF++ + + QL+ A L LA+K+
Sbjct: 96 RKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKV 155
Query: 215 RE 216
E
Sbjct: 156 EE 157
>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
[Lycopersicon esculentum] GI:6434199; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 361
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 158 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 214
R +W+ +V G LA+++ DRF++ + QL ACL LA+K+
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKV 145
Query: 215 RE 216
E
Sbjct: 146 EE 147
>At5g04190.1 68418.m00407 phytochrome kinase substrate-related
contains similarity to Swiss-Prot:Q9SWI1 phytochrome
kinase substrate 1 [Arabidopsis thaliana]
Length = 406
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 258 SLNEPSDFSEEPPNEVRVSIRPITGEPRRL 287
+LNE S SE P N V I+P+ EP L
Sbjct: 220 TLNETSQLSENPKNPVLNHIKPVRIEPALL 249
>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
family protein similar to SP|P39007 Oligosaccharyl
transferase STT3 subunit {Saccharomyces cerevisiae};
contains Pfam profile PF02516: Oligosaccharyl
transferase STT3 subunit
Length = 779
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 33 ILLCSVGGRVSHRPLTATRALVVVATLRATL 63
+LLC V GR S R A LVV+ TL A L
Sbjct: 228 VLLCIVTGRYSPRLYIAYAPLVVLGTLLAAL 258
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,600,368
Number of Sequences: 28952
Number of extensions: 242862
Number of successful extensions: 459
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 35
length of query: 301
length of database: 12,070,560
effective HSP length: 81
effective length of query: 220
effective length of database: 9,725,448
effective search space: 2139598560
effective search space used: 2139598560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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