GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001249-TA|BGIBMGA001249-PA|IPR007590|Protein of unknown
function DUF572
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...   146   3e-36
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    63   4e-11
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    30   0.50 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   4.7  

>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  146 bits (355), Expect = 3e-36
 Identities = 72/113 (63%), Positives = 82/113 (72%), Gaps = 6/113 (5%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNR-----QYTVRLMAPFNMRCATCGEYIYKGKK 55
           MSERKVLNKY PPD+DPS  P  K  K +     + TVRLM PF+MRC TCGEYIYKGKK
Sbjct: 1   MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60

Query: 56  FNARKEDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNF 108
           FNARKE    E Y  I I RFYI+CTRC  EI+F TDPK+ DY  E+GA+RN+
Sbjct: 61  FNARKEKT-GEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNY 112


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 7   LNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARKEDVENE 66
           + KY PP+   +K    K  K R   +R   PF + C  C   I +G +FNA K+++ + 
Sbjct: 1   MGKYIPPEGPNAK---RKFDKLRN-VIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGS- 55

Query: 67  DYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATR 106
            Y   +I+ F +KC  C   I   TDPKNT+Y + +G  R
Sbjct: 56  -YYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGRR 94


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 228 SRIESLTQKTSDKSDSIKKHSWNRSVGGLIT-KP-ALANLVRSKKPESAETSKFTTEALS 285
           +R ++ + +TSD S++ +    NR++    T +P AL++    +K E A++ K    + S
Sbjct: 123 NRNKAKSSETSDSSNTSQSFKENRALKDTATSRPLALSSDTSYQKSEKAKSEKSPFLSTS 182

Query: 286 KSNNAAESNTKSTKD 300
           K+++A  S T + K+
Sbjct: 183 KNSDANYSKTTNQKE 197


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 267 RSKKPESAETSKFTTEALSKSNNAAESNTKSTKDK 301
           R+  P + +TS F+T    K+N A   +  S K+K
Sbjct: 43  RASTPSALQTSSFSTPVEKKTNGAFSGSLFSAKEK 77


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 237 TSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKS 287
           T  ++ SI  HS N +      KPAL  L   K+  + +TS F       S
Sbjct: 239 TGAENPSISPHSLNPNFPQYTEKPALTLLQSPKQNSNYDTSNFQNSVSDSS 289


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,813
Number of Sequences: 5004
Number of extensions: 41988
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 5
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)