GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001249-TA|BGIBMGA001249-PA|IPR007590|Protein of unknown
function DUF572
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298...   180   2e-45
01_05_0524 + 22925354-22926229                                        144   1e-34
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066...    58   1e-08
02_05_1049 - 33752410-33752478,33753242-33753376,33753622-337539...    30   2.8  
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963...    29   5.0  
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824     28   8.7  

>01_05_0525 +
           22928295-22928492,22929435-22929584,22929679-22929813,
           22929914-22929979,22931704-22931793,22932414-22932495,
           22932703-22932908
          Length = 308

 Score =  180 bits (437), Expect = 2e-45
 Identities = 76/108 (70%), Positives = 91/108 (84%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           M ERKVLNKYYPPDFDPSKIPR +  KN+Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 60

Query: 61  EDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNF 108
           EDVE E YLGI+I+RFY KCT+C  EI+FKTDP+N+DY +E+GA+RNF
Sbjct: 61  EDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNF 108


>01_05_0524 + 22925354-22926229
          Length = 291

 Score =  144 bits (348), Expect = 1e-34
 Identities = 64/107 (59%), Positives = 83/107 (77%), Gaps = 2/107 (1%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           M+ERKV+NK+YP DFDPSKIPR +  K +Q  VR+M P  +RCA CGEYI +G KFN+RK
Sbjct: 1   MAERKVINKHYPDDFDPSKIPRRRQHK-KQMVVRMMLPMTVRCAACGEYIGRGTKFNSRK 59

Query: 61  EDVENEDYLG-IRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATR 106
           EDV  E YLG ++++RFYI+C+RC  EI F+TDP +  Y +E+GATR
Sbjct: 60  EDVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATR 106


>02_02_0693 +
           13006243-13006245,13006439-13006501,13006608-13006687,
           13007964-13008072,13009027-13009074,13011044-13011203,
           13011295-13011458,13011549-13011902
          Length = 326

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 26/125 (20%)

Query: 8   NKYYPPDFDPSK----------IPRMKLAKNRQ--YTVRLMAPFNMRCATCGEYIYKGKK 55
           N YYPP++ P K            R +  K  Q    +R   PFN+ C  C   I KG +
Sbjct: 11  NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70

Query: 56  FNARKEDVEN----ED----------YLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIE 101
           FNA K+ V N    +D          Y    I+ F +K   C QEI  +TDPKNT+Y I 
Sbjct: 71  FNAEKKQVGNYYSTKDQGSPNRFGWGYRHPMIWSFTMKSPCCKQEIVIQTDPKNTEYVII 130

Query: 102 AGATR 106
           +GA R
Sbjct: 131 SGAQR 135


>02_05_1049 -
           33752410-33752478,33753242-33753376,33753622-33753971,
           33755304-33755370
          Length = 206

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 12  PPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARKEDVENE 66
           PPDF+P+  P+  L   ++  V +    +MR     E   K ++ N   E +E +
Sbjct: 99  PPDFEPASYPKGWLVGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEED 153


>01_01_1197 -
           9630506-9630681,9630774-9630805,9630894-9630988,
           9631569-9631642,9631732-9631843,9631967-9632030,
           9632210-9632275,9632396-9632526,9632884-9633021,
           9633115-9633227,9633306-9633471,9633588-9633701,
           9633791-9633853,9633953-9634060,9634143-9634259,
           9634343-9634505,9634646-9634743,9634852-9634949,
           9635054-9635190,9635309-9635530,9635625-9635830,
           9636758-9636845,9638085-9638668
          Length = 1054

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 77  YIKCTRCLQEISFKTDPKNTDYEIEAGATRN 107
           + K  R L+ +  KT P NT+Y+I   + RN
Sbjct: 443 WAKAKRALKNLRIKTSPANTEYKIVGLSERN 473


>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
          Length = 200

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 236 KTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKSNNAAESNT 295
           K S+  D   + + + +  G  TK A     ++ K  ++ET++   +  S ++ AA    
Sbjct: 33  KASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSSTSQAARDKA 92

Query: 296 KSTKDK 301
             +KD+
Sbjct: 93  AESKDQ 98


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,773,532
Number of Sequences: 37544
Number of extensions: 217399
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 7
length of query: 320
length of database: 14,793,348
effective HSP length: 82
effective length of query: 238
effective length of database: 11,714,740
effective search space: 2788108120
effective search space used: 2788108120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)