GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001249-TA|BGIBMGA001249-PA|IPR007590|Protein of unknown
function DUF572
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)             212   4e-55
SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)                53   3e-07
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)                 31   1.7  
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  28   8.8  

>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score =  212 bits (517), Expect = 4e-55
 Identities = 96/144 (66%), Positives = 108/144 (75%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           MSERKVLNKYYPPDFDPSKIP++KL K+RQY VRLMAPFNMRC TCGEYIYKGKKFNARK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCTTCGEYIYKGKKFNARK 60

Query: 61  EDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNFMXXXXXXXXXXX 120
           E V+ E YLG+ I+RFYI+C RC+ EI+FKTDP+NTDY  E GATRNF            
Sbjct: 61  ETVQGETYLGLYIFRFYIRCPRCISEITFKTDPENTDYVCENGATRNFQAHRMAEKQEEK 120

Query: 121 XXXXXXXXXXNNPMKLLEYRTEQS 144
                     NNPMK LE RT++S
Sbjct: 121 MQQEREEEEANNPMKALENRTKES 144



 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 167  VDYEGMLRQYQPETVEERKAREEKEDNDFIKSVKFNNCSKKXXXXXXXXXXXXXXXPPSK 226
            +DY  ML  Y  E  E+RK RE++ED+D +KSV   N  ++                 + 
Sbjct: 1127 IDYASMLETYAQEE-EKRKPREQQEDDDLVKSVFGGNKIQRRLSDSDSDDENNSNDSANM 1185

Query: 227  CSRI--------ESLTQ--KTSDKSDSIKKHS---WNRSVGGLITKPALANLVRSKKPES 273
             S          + LT+  K +  S+ I K +   W +SVG L  K +LA+LV+ KK  S
Sbjct: 1186 SSSALTGRKRATDILTEGEKEAMSSEPITKKAKPVWEQSVGNLSNKTSLASLVKVKKASS 1245

Query: 274  AETSKFTTEALSKSNNAAESNTKSTKDK 301
               +K T  A + S    ++ ++  K K
Sbjct: 1246 TPLAKSTASASNPSEGENKNTSQLVKPK 1273


>SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)
          Length = 593

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 48  EYIYKGKKFNARKEDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATR 106
           E I KG ++NA K+ V N  Y    IYRF +KC  C      +TDPKN +Y I +GA R
Sbjct: 223 EQIDKGGRYNAEKKKVGN--YYSTPIYRFRMKCPLCDNYFEIETDPKNCEYNIVSGARR 279



 Score = 36.7 bits (81), Expect = 0.025
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 47  GEYIYKGKKFNARKEDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPK 94
           G  +  G ++NA K+ V N  Y    IYRF +KC  C      +TDPK
Sbjct: 168 GYGLRSGVRYNAEKKKVGN--YYSTPIYRFRMKCHLCDNYFEIETDPK 213


>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
          Length = 246

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 223 PPSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPE 272
           PPS  S        +S   DS+K+H  + + GGL+ KP +    R K  E
Sbjct: 173 PPSTPSSSLLPPPSSSPLQDSLKRHCHHFTSGGLLKKPYIEAFTRKKMVE 222


>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 223 PPSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSK 278
           PPS  +   ++ +K   ++   K+    R  GGL+ +  +A L R K P   +  K
Sbjct: 561 PPSPVATTTAVKRKADTQTSGTKRARKERESGGLVYRKLVAFLFRGKPPPDTDQLK 616


>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 223 PPSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTE 282
           PPSK S    LT+ ++ K +S    +  RS G L        L   K+   +E     T 
Sbjct: 81  PPSKKSNTSKLTENSTPKQNSAIS-ARTRSWGSLKNSLHKKKLALQKETVESEGEDVATS 139

Query: 283 ALSKSNNAAESNTKSTK 299
            + KS ++     ++T+
Sbjct: 140 TVDKSEDSTCKTCRATR 156


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 238 SDKSDSIKKHSWNRSVGGLITKPALANLVR-SKKPESAETSKFTTEALSKSNNAAESN 294
           S  +    ++  NR V G++T     N+VR S    S ET        +KSN+   SN
Sbjct: 181 SSSASGADQNDQNREVEGVVTGSIRENIVRNSLNTNSIETETHKNSLETKSNDEENSN 238


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/73 (24%), Positives = 33/73 (45%)

Query: 225 SKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEAL 284
           S  SR  S +  ++  S S    S + S G   +  + +N   +    S  +S   + + 
Sbjct: 121 SNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSS 180

Query: 285 SKSNNAAESNTKS 297
           S SN+++ SN+ S
Sbjct: 181 SSSNSSSNSNSSS 193


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 226 KCSRIESLTQKTSDKSDSIKKHSWNRSVGGLI---TKPALANLVRSKKPESAETSKFTTE 282
           + +R    ++KT  +++   K   NR   G     TK      ++  KP++ + +    +
Sbjct: 219 QAARPRQASRKTKRQANRKTKRQANRKTKGQASHKTKGQAGRKIKISKPQNHKQAPRPRQ 278

Query: 283 ALSKSNNAAESNTKSTK 299
           A  K+   A   TKSTK
Sbjct: 279 ASPKTKGQASPKTKSTK 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,546,835
Number of Sequences: 59808
Number of extensions: 286300
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 18
length of query: 320
length of database: 16,821,457
effective HSP length: 82
effective length of query: 238
effective length of database: 11,917,201
effective search space: 2836293838
effective search space used: 2836293838
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)