GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001249-TA|BGIBMGA001249-PA|IPR007590|Protein of unknown
function DUF572
         (320 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical pr...   171   4e-43
Z47358-7|CAA87435.1|  369|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.     28   7.7  

>U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical
           protein F37C12.1 protein.
          Length = 323

 Score =  171 bits (417), Expect = 4e-43
 Identities = 83/193 (43%), Positives = 108/193 (55%), Gaps = 1/193 (0%)

Query: 2   SERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARKE 61
           +ERKV  KYYPPDFDPSKIPR K  KNRQ+  R+M PFNM+C TC EYIYKGKKFN ++E
Sbjct: 4   TERKVFQKYYPPDFDPSKIPRAKGQKNRQFVQRVMTPFNMQCNTCHEYIYKGKKFNMKRE 63

Query: 62  DVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNFMXXXXXXXXXXXX 121
             E E YLG++++RFY +C  CL EI+FKTD +N DY+ E GATR F             
Sbjct: 64  TAEGETYLGLKLFRFYFRCPNCLAEITFKTDLENCDYQNEHGATRLF-EAVKLYQDQQKQ 122

Query: 122 XXXXXXXXXNNPMKLLEYRTEQSXXXXXXXXXXXXXXXXXXXXXAVDYEGMLRQYQPETV 181
                     +PMK+LE RT QS                      +D  G L    P   
Sbjct: 123 VDEQEAEDAKDPMKMLEKRTMQSRQEMEEMGNLEDLQESSRTKECIDTIGFLSSTDPHIA 182

Query: 182 EERKAREEKEDND 194
           + ++ +  ++++D
Sbjct: 183 QAQRIKMMEDEDD 195


>Z47358-7|CAA87435.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1307.9 protein.
          Length = 369

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 15/119 (12%)

Query: 1   MSERKVLNKYYPPDFD-------------PSKIPRMKLAKNRQYTVRLMAPFNMRCATCG 47
           M ERK  N YYPPDF+              +   R K        +R   PFN+ C  C 
Sbjct: 1   MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCH 60

Query: 48  EYIYKGKKFNARKEDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATR 106
            ++  G ++NA K+ +    Y    ++ F +KC  C      +TDPKN DYE+  G +R
Sbjct: 61  NHVGMGVRYNAEKKKIGM--YYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSR 117


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 226 KCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEA-- 283
           K S   S    +  KSDS  +    +S    +   +  N   +KKPE  +++K TTE   
Sbjct: 442 KASAAASAALASKSKSDSSDQSKDQKSANVALAVVS-ENKHPTKKPEDPKSTKTTTEEPD 500

Query: 284 LSKSNNAAESNTKSTKDK 301
           + +S NAA +N +ST  K
Sbjct: 501 IDESLNAALANQRSTTTK 518


>Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical
           protein F59B10.2 protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 185 KAREEKEDNDFIKSVKFNNCSKKXXXXXXXXXXXXXXXPPSKCSRIESLTQKTSDKSDSI 244
           ++  E +    + S K  + SK                  S  S I  +T K  DK    
Sbjct: 240 ESESESKSESQVSSSK-TSTSKASSSKAYGSDFESEKSSSSSASTISKVTPKKLDKPQKT 298

Query: 245 KKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKSNNAAESNTKST 298
           KK    R+      KP   ++ ++KKPE      F  +  S+S+N+ +S  + T
Sbjct: 299 KKPDKKRA------KPD--DIRQNKKPEPIPYEDFIPKLSSRSSNSEKSTVRET 344



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 174 RQYQPETVEERKAREEKEDNDFIKSVKFNNCSKKXXXXXXXXXXXXXXXPPSKCSRIESL 233
           ++ +   V+E+KAR++KE         F + S                      S  +S 
Sbjct: 189 KKIEKPAVKEQKARKKKEKTPTPTESSFESSSDSSSTSESSTSSESSSSASESESESKSE 248

Query: 234 TQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKSNNAAES 293
           +Q +S K+ S  K S +++ G            +S    ++  SK T + L K     + 
Sbjct: 249 SQVSSSKT-STSKASSSKAYGSDFESE------KSSSSSASTISKVTPKKLDKPQKTKKP 301

Query: 294 NTKSTK 299
           + K  K
Sbjct: 302 DKKRAK 307


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 230 IESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANL--VRSKKPESAETSKFTTEALSKS 287
           IES +++T  K+ + ++  +  S   +      A+L  +  +K +     +F  E     
Sbjct: 631 IESFSERTPSKNRTSQQMEFQISTSSISKTKTNASLDSIHRRKSKPQPMLEFDAETQKMF 690

Query: 288 NNAAESNTKSTKDK 301
           ++A +S+ KSTK+K
Sbjct: 691 DDAFQSDKKSTKEK 704


>Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical
           protein K08H10.1 protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 231 ESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKSNNA 290
           +S+ +K SD +DS K HS N S   +  K   ++   S K ++++    T +   ++ + 
Sbjct: 570 DSVKEKASDIADSFKAHSTN-SKDNVENK--ASDAYNSAKDKASDAWDKTKDKAGEAKDK 626

Query: 291 AESNTKSTKDK 301
           A     +TKDK
Sbjct: 627 AGDAWDNTKDK 637


>U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical
           protein T19H12.6 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 224 PSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEA 283
           PS  + + +    T + S+  K +   RS  GLI+K A    V+S K  + E +K +  +
Sbjct: 450 PSSFAVLANTYLATKNMSNLAKVNDVLRSSMGLISKIADPMFVKSSKKYTEELAKTSKRS 509

Query: 284 LSKSNNAA 291
            S++ N A
Sbjct: 510 SSEAKNLA 517


>AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 231 ESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALSKSNNA 290
           +S+ +K SD +DS K HS N S   +  K   ++   S K ++++    T +   ++ + 
Sbjct: 570 DSVKEKASDIADSFKAHSTN-SKDNVENK--ASDAYNSAKDKASDAWDKTKDKAGEAKDK 626

Query: 291 AESNTKSTKDK 301
           A     +TKDK
Sbjct: 627 AGDAWDNTKDK 637


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,392,389
Number of Sequences: 27539
Number of extensions: 225652
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 16
length of query: 320
length of database: 12,573,161
effective HSP length: 81
effective length of query: 239
effective length of database: 10,342,502
effective search space: 2471857978
effective search space used: 2471857978
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)