GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001249-TA|BGIBMGA001249-PA|IPR007590|Protein of unknown
function DUF572
         (320 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17130.1 68414.m02087 cell cycle control protein-related cont...   180   2e-45
At3g43250.1 68416.m04565 cell cycle control protein-related cont...   150   1e-36
At2g32050.1 68415.m03915 cell cycle control protein-related cont...   141   6e-34
At1g25682.1 68414.m03178 cell cycle control protein-related cont...    63   3e-10
At1g69030.1 68414.m07898 BSD domain-containing protein contains ...    34   0.15 
At1g67650.1 68414.m07720 expressed protein                             31   0.78 
At5g13560.1 68418.m01566 expressed protein weak similarity to SP...    29   4.1  
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ...    29   5.5  
At1g45233.2 68414.m05190 expressed protein Since this genomic se...    28   7.2  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    28   9.6  
At3g61300.1 68416.m06860 C2 domain-containing protein anthranila...    28   9.6  

>At1g17130.1 68414.m02087 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 331

 Score =  180 bits (437), Expect = 2e-45
 Identities = 89/199 (44%), Positives = 114/199 (57%), Gaps = 1/199 (0%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           M ERKVLNKYYPPDFDP+K+ R++  KN+Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61  EDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNFMXXXXXXXXXXX 120
           EDV  E YLGI+I+RFY KCT+C  E++ KTDP+N+DY +E+GA+RN+            
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDK 120

Query: 121 XXXXXXXXXXNNPMKLLEYRTEQSXXXXXXXXXXXXXXXXXXXXXAVDYEGMLRQYQPET 180
                      + MK LE RT  S                      V  + ML   Q  T
Sbjct: 121 DKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQ-RT 179

Query: 181 VEERKAREEKEDNDFIKSV 199
             E+  R E+ED   IKS+
Sbjct: 180 GAEKVKRIEEEDEAVIKSI 198


>At3g43250.1 68416.m04565 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 249

 Score =  150 bits (364), Expect = 1e-36
 Identities = 64/105 (60%), Positives = 80/105 (76%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           M ERK LNKYYPPDFDP KI R+K  KN+Q  +R M P  +RC TCG Y+ +G KFN R+
Sbjct: 1   MGERKNLNKYYPPDFDPKKIHRIKKPKNQQKKIRFMLPVRVRCNTCGNYMSEGTKFNCRQ 60

Query: 61  EDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGAT 105
           EDV  E YLG++I+RFYIKCT+CL E++ KTDPKN  Y +E+GA+
Sbjct: 61  EDVITETYLGLKIHRFYIKCTKCLAELTIKTDPKNHSYTVESGAS 105


>At2g32050.1 68415.m03915 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 254

 Score =  141 bits (341), Expect = 6e-34
 Identities = 78/201 (38%), Positives = 102/201 (50%), Gaps = 11/201 (5%)

Query: 1   MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCATCGEYIYKGKKFNARK 60
           M ERK LNKYYPP+FDP +IPR++  KN+Q  +R M P  +RC TCG Y+ +G K N R+
Sbjct: 1   MGERKGLNKYYPPNFDPKQIPRIRKPKNQQRKIRSMVPLRIRCNTCGNYMSEGTKINCRE 60

Query: 61  EDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATRNFMXXXXXXXXXXX 120
           E+V  E YLGI+I+RFY KC++C  E+  KTDPKN+ Y  E+GAT  +            
Sbjct: 61  ENVIGETYLGIKIHRFYFKCSKCCTELILKTDPKNSSYVAESGATCVY----------DQ 110

Query: 121 XXXXXXXXXXNNPMKLLEYRTEQSXXXXXXXXXXXXXXXXXXXXXAVDYEGMLRQYQPET 180
                      + M  LE RT  S                     +V  + ML       
Sbjct: 111 HEEEEQAEDGGDRMSSLEKRTLVSKREVDVMAALDEMKSMKSRRVSVSVDSMLEDLSKRH 170

Query: 181 VEERKAREEKEDNDFIKSVKF 201
            EE +  +E ED   IKS KF
Sbjct: 171 KEEEEVAKE-EDAALIKSTKF 190


>At1g25682.1 68414.m03178 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 310

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 1   MSERKVLNKYYPPDFDPSK------------IPRMKLAKNRQYTVRLMAPFNMRCATCGE 48
           +S  +  N YYPP++ P +              R K        +R   P+N+ C  C  
Sbjct: 4   LSAARADNFYYPPEWTPDQGSLNKFQGQHPLRERAKKIGEGILVIRFEMPYNIWCGGCSS 63

Query: 49  YIYKGKKFNARKEDVENEDYLGIRIYRFYIKCTRCLQEISFKTDPKNTDYEIEAGATR 106
            I KG +FNA K+ V N  Y   +I+ F +K   C  EI  +TDP+N +Y I +GA +
Sbjct: 64  MIAKGVRFNAEKKQVGN--YYSTKIWSFAMKSPCCKHEIVIQTDPQNCEYVITSGAQK 119


>At1g69030.1 68414.m07898 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 328

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 229 RIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALAN----LVRSKKPESAETSKFTTEAL 284
           R +S  ++ + KS +I   S + +   L+T+ A  +    L  SKK +S   S+F  E  
Sbjct: 7   RAKSFAEEAAKKSQTITLQSSSTTFVNLVTETAKKSKEFALEASKKADSINVSEFVAETA 66

Query: 285 SKSNN-AAESNTKSTKDK 301
            KS   AAE +TK+ + K
Sbjct: 67  KKSKEFAAEVSTKADQLK 84


>At1g67650.1 68414.m07720 expressed protein
          Length = 651

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 265 LVRSKKPESAETSKFTTEALSKSNNAAESNTKSTKDK 301
           L + K+ E+  TSK    A+SK+N A  S++K++K K
Sbjct: 612 LTKVKQEEAPSTSKSKQAAISKANAAGPSSSKASKKK 648


>At5g13560.1 68418.m01566 expressed protein weak similarity to
           SP|O42184 Restin (Cytoplasmic linker protein-170)
           (CLIP-170) {Gallus gallus}
          Length = 679

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 179 ETVEERKAREEKEDNDFIKSVKFNNCSKKXXXXXXXXXXXXXXXPPSKCSRIES-LTQKT 237
           E  +  +++ +K+D+  +K + F++  K                 PS  S + S  +  T
Sbjct: 540 EQFQVLQSKLDKKDDRRVKEL-FDDMEKMRQQFESIARPTLEIEIPSPRSSVTSPKSSAT 598

Query: 238 SDKSDSIKKHSWNRSVGGLIT-KPALANLVRSKKPESAETSKFTTEA 283
           S KS      S N S     T KP L+N  ++  P +  + +F  EA
Sbjct: 599 SPKSPKPSSSSMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPEA 645


>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
           glycogen synthase Q43847 from [Solanum tuberosum]
          Length = 792

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 223 PPSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTE 282
           PP K S + +  +KTSD   S  K S +R+ G   + P  + L ++ +  + +T K+  +
Sbjct: 215 PPYKPSSVMTSPEKTSDPVTSPGKPSKSRA-GAFWSDPLPSYLTKAPQTSTMKTEKYVEK 273

Query: 283 ALSKSNNAAESNTKSTKDKP 302
               +++      K  +  P
Sbjct: 274 TPDVASSETNEPGKDEEKPP 293


>At1g45233.2 68414.m05190 expressed protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 448

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/66 (21%), Positives = 30/66 (45%)

Query: 223 PPSKCSRIESLTQKTSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTE 282
           PP + +++        DKS + + + W + + G+ T P ++     K  + ++T+K    
Sbjct: 364 PPHQSAKLILGNDHVFDKSRTSRPYKWAQHLAGIETLPEMSPFFTDKDIQYSDTAKGYAS 423

Query: 283 ALSKSN 288
           A    N
Sbjct: 424 ASDHRN 429


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 177 QPETVEERKAREEKEDNDFIKSVKFNNCSKKXXXXXXXXXXXXXXXPPSKCSRIESLTQK 236
           Q E+ EE+  R++KE++      K     K+               P +K     S  ++
Sbjct: 326 QDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEE 385

Query: 237 TSDKSDSIKKHSWNRSVGGLITKPALANLVRSKKPESAETSKFTTEALS-KSNNAAESNT 295
              K   IK+   + S  G   K        S++ E+  + K   +  S  S+N  + + 
Sbjct: 386 NEIKETEIKEKEESSSQEGNENKETEKKSSESQRKENTNSEKKIEQVESTDSSNTQKGDE 445

Query: 296 KSTKD 300
           + T +
Sbjct: 446 QKTDE 450


>At3g61300.1 68416.m06860 C2 domain-containing protein anthranilate
           phosphoribosyltransferase (fragment) - Pisum sativum,
           PIR:T06460
          Length = 972

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 260 PALANLVRSKKPESAETSKFTTEALSKSNNAAESNTKSTKDKP 302
           P + NL+ +KK  S    KF     ++SN++   N +S + +P
Sbjct: 139 PKVPNLISTKKIPSKSRHKFHNIPTNESNHSPRGNQQSFQPQP 181


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,931,341
Number of Sequences: 28952
Number of extensions: 201538
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 13
length of query: 320
length of database: 12,070,560
effective HSP length: 81
effective length of query: 239
effective length of database: 9,725,448
effective search space: 2324382072
effective search space used: 2324382072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)