GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001248-TA|BGIBMGA001248-PA|undefined
         (698 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.69 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   3.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   4.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   6.4  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 466 KREKESENKIGIQQKLAAELLNKEEIIGKMQIQTRELIKNIKLNEQKVIQYEQYVRDLQA 525
           K+ +  +NKI ++ +   E L        +Q Q RE  +  KL  + +++YE Y++    
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQYRREAWLVQ-QEREQ-EYEKLKRKMILEYELYIKYSHT 73

Query: 526 HNRTI 530
           H + +
Sbjct: 74  HEKKL 78


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 311 VKMLEDQSRQKEVQLEARARKLRESLKTGEVTTSQLIQQR 350
           +K+  DQ + K  +LE   RKL E +K  +    Q+I ++
Sbjct: 363 LKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQ 402



 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/36 (27%), Positives = 24/36 (66%)

Query: 547 QEIMDLKMKLLDVVHRNEELSEILAKKDQELEQQDK 582
           Q+ ++LK+ L     ++++L E + K D+E+++ D+
Sbjct: 358 QQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDE 393


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 560 VHRNEELSEILAKKDQELEQQDKNSRGQARVIKIREEL 597
           VH  EE++  L KK   ++    NS+   +VIK  + L
Sbjct: 191 VHSGEEVNIFLDKKGFHMDGYTNNSKWDFKVIKATKVL 228


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 460 DEVTTCKREKESENKIGIQQKLAAELLNKEEIIGKMQIQTRELIKNIKL 508
           DE+   + +K  +  I  +QK  AE+L KE      Q   + LI+  K+
Sbjct: 394 DEILEVENDKILQEVIKFRQKQRAEILAKEHKAAADQKLEKHLIEYKKM 442


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 345 QLIQQRDSLQAEVLECK-QQIEKLTVQHKSAIQQLEEDLKQTKRALQEQCEITKREI 400
           Q+ QQ +  +   +  K + +  L     S++++ EE+ K+TK++L      +K EI
Sbjct: 503 QVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLSPSENQSKMEI 559


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 312 KMLEDQSRQKEVQLEARARKLRESLKTGEVTTSQLIQQRDSLQAEVLECKQQ 363
           K+L  +  +++ Q++A+ +  ++  +T  V  +Q  QQ+   Q +  + +QQ
Sbjct: 405 KLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQ 456


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 15/80 (18%), Positives = 36/80 (45%)

Query: 284 RQTRNRVAKMDKQLREAEASITSLTGTVKMLEDQSRQKEVQLEARARKLRESLKTGEVTT 343
           R ++  +  + K++  +  S+ +          ++ Q+  ++E    + RE  +  +  T
Sbjct: 28  RPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVT 87

Query: 344 SQLIQQRDSLQAEVLECKQQ 363
           SQ  QQ+   Q +  + +QQ
Sbjct: 88  SQQQQQQQQQQQQDQQQQQQ 107


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 480 KLAAELLNKEEIIGKMQIQTR 500
           KLAA     EEI GK  +Q R
Sbjct: 288 KLAANRAKLEEIAGKFNLQVR 308


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,592
Number of Sequences: 429
Number of extensions: 6633
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 12
length of query: 698
length of database: 140,377
effective HSP length: 62
effective length of query: 636
effective length of database: 113,779
effective search space: 72363444
effective search space used: 72363444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)