GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001247-TA|BGIBMGA001247-PA|IPR011072|Protein kinase
PKN/PRK1, effector, IPR009053|Prefoldin
         (490 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.17 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.17 

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 0.17
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 119 PPCHPVQSGSYNYQVLNEELSKERAA 144
           PP +P  +G Y Y +L+ E+S+  A+
Sbjct: 162 PPMYPFPAGQYPYPILSPEMSQVAAS 187


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 0.17
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 119 PPCHPVQSGSYNYQVLNEELSKERAA 144
           PP +P  +G Y Y +L+ E+S+  A+
Sbjct: 54  PPMYPFPAGQYPYPILSPEMSQVAAS 79


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.127    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,729
Number of Sequences: 317
Number of extensions: 2926
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 490
length of database: 114,650
effective HSP length: 59
effective length of query: 431
effective length of database: 95,947
effective search space: 41353157
effective search space used: 41353157
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)