GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001246-TA|BGIBMGA001246-PA|IPR002223|Proteinase
inhibitor I2, Kunitz metazoa
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    31   0.21 
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.63 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 111 DNNFRDRDECLSVCHKNTSVGKKSESVSETRIKKMKATPSSDDNEVMLNDKPTVRDS 167
           ++NFR+     SV   N  VGK  ESV  T++K ++      + E +  +   VR S
Sbjct: 843 ESNFRNHSNP-SVRRSNLRVGKTVESVQNTKLKSVENDSGKAETETVGKNPEVVRKS 898


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 112 NNFRDRDECLSVCHKNTSVGKKSESVSETRIKKMKATPSSDDNEV 156
           +N +  DE   V H N+S+GK S  +S       ++  S  + +V
Sbjct: 162 SNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSETDV 206


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 126 KNTSVGKKSESVSETRIKKMKATPSSDDNEVMLNDKPTVRD 166
           + TSV   SE   ET + KM  TP  +DN + L     VR+
Sbjct: 448 EQTSVNNDSEEF-ETLLAKMNMTPDFNDNLLQLKFTDDVRN 487


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 108  GGNDNNFRDRDECL---SVCHKNTSVGKKSESVSETRIKKMKATPS---SDDNEVMLNDK 161
            G N +++ +R E L   S  H  +  GKK  S  ET + K+  +PS    D N ++    
Sbjct: 1755 GSNKSSYMERLEKLKQNSERHLQSVGGKKVYSSEETPVNKILVSPSVSILDHNRILSQST 1814

Query: 162  P 162
            P
Sbjct: 1815 P 1815


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,176
Number of Sequences: 5004
Number of extensions: 49874
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 5
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)