GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001245-TA|BGIBMGA001245-PA|IPR000884|Thrombospondin,
type I, IPR002861|Reeler region, IPR009465|Spondin, N-terminal
         (541 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   2.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   3.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   3.1  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   7.1  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    22   9.4  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    22   9.4  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 406 PWGPCSVTSGAARASRQRDYVWPARAHAEACRVQLTDYKHCH 447
           PW        AA+    +DY  P   HA A RV +   K  +
Sbjct: 460 PWTAPEQVQRAAKCIIGKDYSLPMVNHAAASRVNIQRMKQVY 501


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 479 SPCDGCGVRARTRHYLAPRAYKRCHIGFRARTILSQAMPCAEGPCE 524
           +PC   G     +  L    +  C +GF  R   S+   CA  PC+
Sbjct: 305 NPCSNAGTLDCVQ--LVNDYHCNCKLGFMGRHCESKVNFCATSPCQ 348


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 222 ADDG-STTALEKELKAESDDIRTIIKARGISWQQLTGTGIPSTFAVFRVD 270
           +D+G   T LE E   ES D  T I A G  W +     +    +VFR+D
Sbjct: 512 SDEGPQITELEPET-IESQDAITRIYACGTMWHETPEEMMEFLKSVFRLD 560


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 222 ADDG-STTALEKELKAESDDIRTIIKARGISWQQLTGTGIPSTFAVFRVD 270
           +D+G   T LE E   ES D  T I A G  W +     +    +VFR+D
Sbjct: 512 SDEGPQITELEPET-IESQDAITRIYACGTMWHETPEEMMEFLKSVFRLD 560


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 455 AVSEYEPDPAESSGPCAMSPWSEWSPCDGCGVRARTRHYLAPRAYKRCHIGFRARTILSQ 514
           +++ Y  D  +S      +P  +   C  CG RA   HY A    + C  GF  R+I   
Sbjct: 162 SLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNA-LTCEGCK-GFFRRSITKN 219

Query: 515 AM-PCAEG-PCE 524
           A+  C  G  CE
Sbjct: 220 AVYQCKYGNNCE 231


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 206 RVWQEGRVATTGLRRLADDGSTTALEKELKAESDD 240
           ++    RV T  ++ L D+G  T+  +ELK    D
Sbjct: 34  KILNNDRVLTNYIKCLMDEGPCTSEGRELKKTLPD 68


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 241 IRTIIKARGISWQQL 255
           IR +IK R   WQQL
Sbjct: 87  IRFLIKERNSDWQQL 101


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 241 IRTIIKARGISWQQL 255
           IR +IK R   WQQL
Sbjct: 87  IRFLIKERNSDWQQL 101


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,595
Number of Sequences: 317
Number of extensions: 5468
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 541
length of database: 114,650
effective HSP length: 60
effective length of query: 481
effective length of database: 95,630
effective search space: 45998030
effective search space used: 45998030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)