GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001245-TA|BGIBMGA001245-PA|IPR000884|Thrombospondin,
type I, IPR002861|Reeler region, IPR009465|Spondin, N-terminal
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    29   2.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   8.8  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 285 SPDWIVGVSALELCNVNCTWRTSASLSLYPYDAGTDNG--ISYTSRRMPTIPAAPVRALR 342
           +P  ++ +S+    N + +  +  SLSL    +G+DN   +S  SR +P+ P  P RA+ 
Sbjct: 29  TPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREIPSDPPLP-RAVP 87

Query: 343 T 343
           T
Sbjct: 88  T 88


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/15 (53%), Positives = 14/15 (93%)

Query: 145 GPSSLNRQPPIVEPC 159
           GP++L+R+P I++PC
Sbjct: 186 GPAALSREPTILQPC 200


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,708
Number of Sequences: 5004
Number of extensions: 101181
Number of successful extensions: 217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 2
length of query: 541
length of database: 2,362,478
effective HSP length: 76
effective length of query: 465
effective length of database: 1,982,174
effective search space: 921710910
effective search space used: 921710910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)