GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001245-TA|BGIBMGA001245-PA|IPR000884|Thrombospondin,
type I, IPR002861|Reeler region, IPR009465|Spondin, N-terminal
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0721 + 31495785-31496231                                         31   1.8  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    31   3.1  
10_01_0285 + 2974379-2974543,2974611-2974781,2975726-2975734           30   4.1  
09_04_0582 - 18694158-18694256,18694522-18694560,18695564-186957...    30   4.1  
03_03_0252 - 15857907-15858246,15858340-15858608                       30   5.4  
01_06_1049 - 34114487-34114579,34115406-34115557,34115840-341164...    29   7.1  
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60...    29   9.4  

>01_06_0721 + 31495785-31496231
          Length = 148

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 380 VTEPGTDQNVQEGVGAGAWCATHGWGPWGPCSVTSGAARASRQRDYVWPARA---HAEAC 436
           V  P  ++  + G  + AW A  GWG  G  +   G A A         ARA     EA 
Sbjct: 7   VQPPPLEELGEAGGSSAAWLARGGWGKAGGSATRGGEASAPAGGTAAQLARAREGEGEAR 66

Query: 437 RVQLTDYKHCHGPRMHCRAVSEYE 460
             +     H HG R    A +  E
Sbjct: 67  WARGASLSHAHGGRGEASAAAAGE 90


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 399  CATHGW-GPWGPCSVTSGAARASRQRDYVWPA 429
            C T+G+ GP G C +T+GAA A +  D   PA
Sbjct: 2770 CTTYGYCGPNGYCDITTGAAAACKCLDGFEPA 2801


>10_01_0285 + 2974379-2974543,2974611-2974781,2975726-2975734
          Length = 114

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 318 GTDNGISYTSRRMPTIPAAPVRALRTDWPRDVRSPFFSTTGEMRPFARVRLTRLRLYEKS 377
           G  + I+ ++ R+    AA     RT WP  VR    ++  E+R   R   TR+R    S
Sbjct: 2   GPISQITSSTSRLSNAAAAATANRRTPWPSRVRLICAASEPELR---RDPSTRIRTKRDS 58

Query: 378 CDVTEPGTDQNVQEGVGAG 396
           C   + G  + +  GVG G
Sbjct: 59  CAAAKVGVVEFL-NGVGKG 76


>09_04_0582 -
           18694158-18694256,18694522-18694560,18695564-18695707,
           18695783-18695914,18696882-18697103,18697496-18697963
          Length = 367

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 209 QEGRVATTGLRRLADDGSTTALEKELKAESDDIRTIIKARGISWQQL 255
           +EGR A   LR + ++G    +    KA   D+R    AR ++W+QL
Sbjct: 14  EEGRRAAL-LREITEEGGFAFVASAEKAACGDLRAAEAAREMAWEQL 59


>03_03_0252 - 15857907-15858246,15858340-15858608
          Length = 202

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 400 ATHGWGPWGPCSVTSGAARASRQRDYVWPARAHAEACRVQLTD 442
           A  G  P  PC  T+   +A+     +WPA A AEA    + D
Sbjct: 17  ARRGQPPQPPCMTTAPEQQAAAGGAVIWPAAAAAEAKEKMVVD 59


>01_06_1049 -
           34114487-34114579,34115406-34115557,34115840-34116418,
           34117551-34117941,34118170-34118583
          Length = 542

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 230 LEKELKAESDDIRTIIKARGISWQQLTGTGIPSTFAVF 267
           ++KE K+E++D+ T+IK   I W+  +G  + S    F
Sbjct: 32  MKKEQKSEAEDL-TVIKKVSIEWETTSGNKVDSVHPPF 68


>05_01_0090 +
           598311-599597,599884-599997,600186-600450,600994-601109
          Length = 593

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 456 VSEYEPDPAESSGPCAMSPWSEWSPCDGCGVRARTRHYL--APRAYKRCHIGFRARTILS 513
           +SE EPDP E++             C+GCG  AR R  L    RA +R   G+ A    +
Sbjct: 283 LSEDEPDPPEAAAAAGR--------CNGCGGAARHREVLDAMARALRRTEEGYFAEA-EA 333

Query: 514 QAMPCAE 520
           +A  C E
Sbjct: 334 RAAECPE 340


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,851,850
Number of Sequences: 37544
Number of extensions: 791386
Number of successful extensions: 1686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 7
length of query: 541
length of database: 14,793,348
effective HSP length: 86
effective length of query: 455
effective length of database: 11,564,564
effective search space: 5261876620
effective search space used: 5261876620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)