GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001245-TA|BGIBMGA001245-PA|IPR000884|Thrombospondin,
type I, IPR002861|Reeler region, IPR009465|Spondin, N-terminal
         (541 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    26   0.91 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    26   0.91 

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 206 RVWQEGRVATTGLRRLADDGSTTALEKELK 235
           R+ Q GR+ T  ++ + D+G  T   +ELK
Sbjct: 32  RILQNGRILTNYIKCMLDEGPCTNEGRELK 61


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 206 RVWQEGRVATTGLRRLADDGSTTALEKELK 235
           R+ Q GR+ T  ++ + D+G  T   +ELK
Sbjct: 32  RILQNGRILTNYIKCMLDEGPCTNEGRELK 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,569
Number of Sequences: 429
Number of extensions: 6734
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 541
length of database: 140,377
effective HSP length: 61
effective length of query: 480
effective length of database: 114,208
effective search space: 54819840
effective search space used: 54819840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)