GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001245-TA|BGIBMGA001245-PA|IPR000884|Thrombospondin,
type I, IPR002861|Reeler region, IPR009465|Spondin, N-terminal
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25720.1 68416.m03201 hypothetical protein                          31   1.9  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   7.8  
At3g05680.1 68416.m00634 expressed protein                             29   7.8  

>At3g25720.1 68416.m03201 hypothetical protein 
          Length = 282

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 388 NVQEGVGAGAWCATHGWGPWGPCSVTSGAARASRQR 423
           N+  G+ A  W  T  W P+GP  +  GAAR +R R
Sbjct: 105 NIGNGLTARFW--TDNWTPFGPLLIHIGAARPNRLR 138


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 24/91 (26%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 446 CHGPRMHCRAVSEYEPDP------AESS--GPCAMSPWSEWSPCDGCGVRARTRHYLAPR 497
           CHGPR         +P        AES+   PC   P   W PC G  + A  R   + R
Sbjct: 531 CHGPRPPPNREFILKPTKKMLHIQAESTPGSPCPRCPEPVWRPCVGHHLAAEKRMICSDR 590

Query: 498 AYKRCHIGFRARTILSQAMPCAEGPCEQLVH 528
               C        +    +PC    C    H
Sbjct: 591 TQFACD------NLCGNPLPCGNHYCSYFCH 615


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 61  LRATADPHQPLGVFQAYDAQTKLHESCAPAVDNATAHPKTEVQVIWNAPLSVRG 114
           +RAT+ P   L VF   + ++K    C P +   +A    EV+ +    L VRG
Sbjct: 14  VRATSPPSFALEVFVRCEGESKFKRLCNPFLYTPSAPYPLEVEAVVTNHLVVRG 67


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,342
Number of Sequences: 28952
Number of extensions: 567359
Number of successful extensions: 1052
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 4
length of query: 541
length of database: 12,070,560
effective HSP length: 85
effective length of query: 456
effective length of database: 9,609,640
effective search space: 4381995840
effective search space used: 4381995840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)