GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    31   0.37 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    31   0.48 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    30   0.84 
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   3.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.5  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   7.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   7.9  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 137 DGAMHMINYLNEIYSESLQPSSDE--ASVSANSEDAPKYYFTD---EDRVIVCELSKALF 191
           DG+  +  ++   Y   L+   D   +SV    E A K+ F       + ++ ++ K L 
Sbjct: 324 DGSFILEAHIQIDYKRILEIIIDHLGSSVPLIQEKALKWLFEFIYIAPKDVLLQIPKVLE 383

Query: 192 NLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTS-SKSNDLD 234
           NL+ L + D    +  K    NLV ++ KIM ++ S S++N+ D
Sbjct: 384 NLLPLMSNDENMRQSAKDLSQNLVILVSKIMDIEFSGSETNNKD 427


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 173 YYFTDEDRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSND 232
           ++ +  +R    E  KA F  + + N DT  TE   Q+F++L    G+I ++      ND
Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNLDTEITE---QEFSDLFGQFGEITSLSLVKDQND 298

Query: 233 LDLMNNIVNLLTSIHTLFYMSLTEEIGDKQ-KPDHIYEGR 271
                  VN     H     ++ +E+ DK+ K   +Y GR
Sbjct: 299 KPRGFGFVNYAN--HECAQKAV-DELNDKEYKGKKLYVGR 335


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 183 VCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
           + EL K +F+  +L      + EK+ Q+F +L   +G +      S +ND +L  N
Sbjct: 392 ISELRKEVFDTDLLIQASIDSLEKKVQKFNSLAYRIGIVPIAAIRSANNDFELEIN 447


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 176 TDEDRVIVCELSKALFNLII-LPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLD 234
           T+E   I+ +++  L+   + +PN   PT     +    +V  +G  +  +T S  + L 
Sbjct: 107 TEEYNKIISKVTNDLYQYCLAVPNTTLPTVPVGPEDKAVVVQKIGSPLVKKTGSLKDHLQ 166

Query: 235 LMNNIVNL 242
           + N  +NL
Sbjct: 167 IANEGINL 174


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 229 KSNDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEGRDMTSLV-ILLQFLKHQL 287
           K NDL+L   ++N L  + T F              D+++E R +T L   +++  K  L
Sbjct: 687 KINDLELRGIVINSLCKLFTKF-----------SNFDYLFEDRTVTFLTDFIIRKQKAHL 735

Query: 288 TASDERQ--NLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKP 334
           +A   +Q  N+  + SP    + +  R+   RK  ++  L +   V KP
Sbjct: 736 SADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKP 784


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 329 RDVSKPPEQGDELRNHLCRLLTTPVTSVRDLVAEFLFVL 367
           R V  PP+    LRN+   LLTT    +R ++ E L+ +
Sbjct: 356 RSVFAPPQLRFSLRNNTLPLLTTKRVFLRGVLEELLWFI 394


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 174 YFTDEDRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDL 233
           YF ++  ++    S    +    P    P   K ++Q T  VS      T QT    ++L
Sbjct: 233 YFENQLHLVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVS-----KTSQTDKDEDNL 287

Query: 234 DLMNNIVNLLTSIHTL 249
           D   N++  + ++H L
Sbjct: 288 DFTKNLLTRIKNLHPL 303


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,215
Number of Sequences: 5004
Number of extensions: 86849
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 8
length of query: 493
length of database: 2,362,478
effective HSP length: 76
effective length of query: 417
effective length of database: 1,982,174
effective search space: 826566558
effective search space used: 826566558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)