GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0170 + 6147026-6147443,6147969-6147994                           29   6.4  
06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448     29   6.4  
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784...    29   8.4  
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    29   8.4  

>10_02_0170 + 6147026-6147443,6147969-6147994
          Length = 147

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 11/51 (21%)

Query: 44  LEPMESAEKDPTLLVVPCKEVAIEAMK----CLCNITFNSELARNVCVNTR 90
           L P  +   DPT+L  PC E   E +K    CLC +   +E++RN   NTR
Sbjct: 59  LMPCATVSDDPTML-TPCCEAVAEVLKSDPECLCKV---AEMSRN---NTR 102


>06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448
          Length = 150

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 47  MESAEKDPTLLVVPCKEVAIEAMKCLCNITFNSELARNVCVNTRIAHGLITRMKI 101
           M   +  P     P KE     +KCLC++  + E+ +   +N   A  L TR  I
Sbjct: 46  MNGTDTPPAACCDPLKEAVKNELKCLCDLYASPEIFKAFNINISDALRLSTRCGI 100


>08_02_0575 -
           18876988-18877029,18877072-18877102,18878290-18878418,
           18878512-18879154,18882042-18883990,18884964-18885040
          Length = 956

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 73  CNITFNSELARNVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFILTAL 125
           C++    EL   VCV  R+   +IT  K+C       EL++ D++ + +L AL
Sbjct: 501 CSLLQRLELFPRVCVFHRLPSWIITIEKLCILKVAVMELLRKDIETLSMLNAL 553


>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 423 VVGCTRPPPADPFRGMTDEQK---EYEAMKLVNLFDKMVTAGVVKPARVGADGQLQ 475
           ++ C  PPP   F  +    K   E    KL++LFD ++     +P R+  DG L+
Sbjct: 395 MLSCFCPPPFKQFLEVVTNMKFDEEPNYAKLISLFDSLIEVPASRPIRI--DGALK 448


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,853
Number of Sequences: 37544
Number of extensions: 502032
Number of successful extensions: 1232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 4
length of query: 493
length of database: 14,793,348
effective HSP length: 85
effective length of query: 408
effective length of database: 11,602,108
effective search space: 4733660064
effective search space used: 4733660064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)