GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)                   50   6e-06
SB_31016| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   7e-05
SB_8901| Best HMM Match : UPF0203 (HMM E-Value=3.7)                    34   0.23 
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.92 
SB_11416| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.9  
SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)                        29   6.5  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        29   8.5  
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.5  

>SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)
          Length = 432

 Score = 49.6 bits (113), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 66  IEAMKCLCNITFNSELARNVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFILTAL 125
           IE++KCLCNI ++S  AR  C+   +   L+ R+K        +++  +D++L+F+LTA 
Sbjct: 183 IESLKCLCNIMYHSAPAREHCIKFDVTLSLLHRLKNWADKSVPQDVFYFDLRLMFLLTAF 242

Query: 126 IENIR 130
              IR
Sbjct: 243 EGAIR 247


>SB_31016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 46.0 bits (104), Expect = 7e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 429 PPPADPFRGMTDEQKEYEAMKLVNLFDKMVTAGVVKPARVGADGQ 473
           P   +P  GMTDE+KE EAMKL  + + +   GV++ A +G DG+
Sbjct: 5   PDRPNPLDGMTDEEKEEEAMKLGEMIEHLNKMGVIQTAEIGPDGR 49


>SB_8901| Best HMM Match : UPF0203 (HMM E-Value=3.7)
          Length = 602

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 14  CLCFMLRDQDDIENVLCERWVITLIDKSGLLEPMESAEKDPTLLVVPCKEVAIEAMKCLC 73
           C    + D+ D +  L   W  +  +  G L+P  +   +   + +P     +  +    
Sbjct: 366 CQRMSVSDKLDTQRTLRTSWDESRENCYGSLQPSTAFSGETLYVAIPKLSEGVTLVPGSL 425

Query: 74  NITFNSELAR--NVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFILTALIENIRL 131
            + F+  ++R  N  V   +   L+ R+KI       ++   YD   +F   + +  +R+
Sbjct: 426 RVGFDLSISRQANNTVVNNVGRNLVNRLKITFAGETLQDTNLYD---VFKTGSRLREVRV 482

Query: 132 KFRHEDGAMHMINYLNEIYSESLQPS 157
             RH++ + ++    N+++S++L+P+
Sbjct: 483 P-RHQERSRYIDGMPNKVFSQALRPT 507


>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 164 SANSEDAPKYYFTDEDRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMT 223
           S NS D   Y       +I C L++A+ +L +LPN    T E  KQ FT  V+ LG+  T
Sbjct: 84  SGNSSDGKAYIL-----LITCSLTRAV-HLEVLPNR---TLEDFKQAFTGFVARLGRPET 134

Query: 224 VQTSS 228
           + + +
Sbjct: 135 IYSDN 139


>SB_11416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 82  ARNVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFILTALIENIRLKFRHEDGAMH 141
           A N  VN  +   L+ R+KI       ++  +YD   +F   + +  +R+  RH++ + +
Sbjct: 74  ANNTVVNN-VGRNLVNRLKITFAGETLQDTNRYD---VFKTGSRLREVRVN-RHQERSRY 128

Query: 142 MINYLNEIYSESLQPS 157
           +    N+++S++L+P+
Sbjct: 129 IDGMPNKVFSQALRPT 144


>SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)
          Length = 576

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 280 LQFLKHQLTASDER--QNLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKPPEQ 337
           L  +KH   A   R  Q L EKL  +      C  V V+  F+ +  + H R++    E 
Sbjct: 451 LAAIKHVKAAFHIRLAQQLKEKLGLVAATSPTCVDV-VKDGFVFRVKIVHYREMVLLQEP 509

Query: 338 GDELRNHL 345
           GDE+ +HL
Sbjct: 510 GDEIDSHL 517


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 26/252 (10%)

Query: 123 TALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDRVI 182
           T+ +EN+R   + +   +  +N  NE   E L  S       A  E A K    + D+V+
Sbjct: 521 TSQMENLRENLKLKQMTVQQLNKDNEALREKLSSSVQIHDKVAELEQALKAKTDELDQVL 580

Query: 183 VCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNI-VN 241
            C+  K                +K     TN V+ L K + +   +  ++  ++ N+  N
Sbjct: 581 ACQKGK------------DEVHDKAIAHLTNEVTSLQKQIDILEDNSQSESSMVENLKEN 628

Query: 242 LLTSIHTLFYMSL-TEEIGD-----KQKPDHIYEGRDMTS--LVILLQFLKHQLTASDER 293
           L     T+  ++   EE+       K K + + +  D+ +  L  L     ++L A  E+
Sbjct: 629 LKVKSETVMQLNRDNEEVRAELDRMKSKLESVMQDLDVKNKELESLSSERDNKLLALTEQ 688

Query: 294 QNLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKPPEQGDELRNHLCRL---LT 350
             + EK + +  +  +   ++V+ + L++ V+       +  E+ D  +N L  L   L+
Sbjct: 689 --IAEKDNSLDELEKQNEALKVEHRQLQQDVVAFRNQSEELTERLDVAQNRLLSLQDVLS 746

Query: 351 TPVTSVRDLVAE 362
           +   SVRDL  E
Sbjct: 747 SRDESVRDLNQE 758


>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 211 FTNLVSVLGKIMTVQTSSKSNDLDLMNNIVNLLTSIHTLFYMSLTE 256
           FTN +  L   + + T   +N LD + N ++LLT + T    SLTE
Sbjct: 40  FTNTLDSLINTLDLLTELFTNTLDSLINTLDLLTELFTNTLDSLTE 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,072
Number of Sequences: 59808
Number of extensions: 616959
Number of successful extensions: 1303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 9
length of query: 493
length of database: 16,821,457
effective HSP length: 85
effective length of query: 408
effective length of database: 11,737,777
effective search space: 4789013016
effective search space used: 4789013016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)