GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004873-1|AAO45229.1|  573|Drosophila melanogaster LD22866p pro...   237   3e-62
AE014298-1318|AAF46477.2|  573|Drosophila melanogaster CG15797-P...   237   3e-62
BT023931-1|ABB36435.1| 1135|Drosophila melanogaster RE58741p pro...    31   4.8  
AE014297-1441|AAF54739.2| 1111|Drosophila melanogaster CG3532-PA...    31   4.8  
AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-P...    30   6.3  

>BT004873-1|AAO45229.1|  573|Drosophila melanogaster LD22866p
           protein.
          Length = 573

 Score =  237 bits (580), Expect = 3e-62
 Identities = 157/462 (33%), Positives = 234/462 (50%), Gaps = 56/462 (12%)

Query: 63  EVAIEAMKCLCNITFNSELARNVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFIL 122
           EV  EA+KCLCN+ + S   R  C+       ++ R+      P   E   YDMKL+F+L
Sbjct: 130 EVIAEALKCLCNLVYQSSDCRRQCLRQHCLDAILKRVASSMRHPCALEY--YDMKLLFLL 187

Query: 123 TALIENIRLKFRHE-DGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDRV 181
           TAL    R + + + +G  +M  +L++   E         SV             +E   
Sbjct: 188 TALEPAARSRLQIDLNGLTYMTKWLDDKLGED--------SVG------------EEQLN 227

Query: 182 IVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIVN 241
           I+CEL K +FN+   P++     E +    T ++  L  ++     +   D  ++ + +N
Sbjct: 228 IICELLKVMFNVTSAPDKSPNEYEIQSLHLTGVLREL--LLRFGDLATEKDRAVVTHAIN 285

Query: 242 LLTSIHTLFYMSLT--------------EEIGDKQKP-------------DHIYEGRDMT 274
           LLT+I       LT              E+  +K+K                 +E R++ 
Sbjct: 286 LLTNISGSCLTELTLRCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVR 345

Query: 275 SLVILLQFLKHQLTASDERQNLYEKLSPILTVLNKCARV-RVQRKFLRKAVLPHLRDVSK 333
           SL +LL++L+  L   +   + +E LSP+LTVL KCAR  RV R +LR+ +LP LRDVS+
Sbjct: 346 SLDVLLRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPLRDVSQ 405

Query: 334 PPEQGDELRNHLCRLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNXXXXXXXXXX 393
            PE G ELRNHLCR LT P   +RDL AE LFVLCKE V RM+KYTG+GN          
Sbjct: 406 RPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKYTGYGNAAGLFAKRGI 465

Query: 394 X--XXXXXXXYXX-XXXXXXXXYRRHAHALDPVVGCTRPPPADPFRGMTDEQKEYEAMKL 450
                     Y           Y++    ++PV+GC  P        +++EQKEYEAM+L
Sbjct: 466 LDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLGCVEPRSKSHLDDISEEQKEYEAMQL 525

Query: 451 VNLFDKMVTAGVVKPARVGADGQLQAVEHVLQLREDLPKRTM 492
           VNL +++   G+VKPA +  DG+ Q +EH+LQL+E+LP++ +
Sbjct: 526 VNLIEQLRQGGIVKPAMIDKDGRPQPLEHILQLQEELPQQQL 567


>AE014298-1318|AAF46477.2|  573|Drosophila melanogaster CG15797-PA
           protein.
          Length = 573

 Score =  237 bits (580), Expect = 3e-62
 Identities = 157/462 (33%), Positives = 234/462 (50%), Gaps = 56/462 (12%)

Query: 63  EVAIEAMKCLCNITFNSELARNVCVNTRIAHGLITRMKICKHIPYKKELMQYDMKLIFIL 122
           EV  EA+KCLCN+ + S   R  C+       ++ R+      P   E   YDMKL+F+L
Sbjct: 130 EVIAEALKCLCNLVYQSSDCRRQCLRQHCLDAILKRVASSMRHPCALEY--YDMKLLFLL 187

Query: 123 TALIENIRLKFRHE-DGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDRV 181
           TAL    R + + + +G  +M  +L++   E         SV             +E   
Sbjct: 188 TALEPAARSRLQIDLNGLTYMTKWLDDKLGED--------SVG------------EEQLN 227

Query: 182 IVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIVN 241
           I+CEL K +FN+   P++     E +    T ++  L  ++     +   D  ++ + +N
Sbjct: 228 IICELLKVMFNVTSAPDKSPNEYEIQSLHLTGVLREL--LLRFGDLATEKDRAVVTHAIN 285

Query: 242 LLTSIHTLFYMSLT--------------EEIGDKQKP-------------DHIYEGRDMT 274
           LLT+I       LT              E+  +K+K                 +E R++ 
Sbjct: 286 LLTNISGSCLTELTLRCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVR 345

Query: 275 SLVILLQFLKHQLTASDERQNLYEKLSPILTVLNKCARV-RVQRKFLRKAVLPHLRDVSK 333
           SL +LL++L+  L   +   + +E LSP+LTVL KCAR  RV R +LR+ +LP LRDVS+
Sbjct: 346 SLDVLLRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPLRDVSQ 405

Query: 334 PPEQGDELRNHLCRLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNXXXXXXXXXX 393
            PE G ELRNHLCR LT P   +RDL AE LFVLCKE V RM+KYTG+GN          
Sbjct: 406 RPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKYTGYGNAAGLFAKRGI 465

Query: 394 X--XXXXXXXYXX-XXXXXXXXYRRHAHALDPVVGCTRPPPADPFRGMTDEQKEYEAMKL 450
                     Y           Y++    ++PV+GC  P        +++EQKEYEAM+L
Sbjct: 466 LDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLGCVEPRSKSHLDDISEEQKEYEAMQL 525

Query: 451 VNLFDKMVTAGVVKPARVGADGQLQAVEHVLQLREDLPKRTM 492
           VNL +++   G+VKPA +  DG+ Q +EH+LQL+E+LP++ +
Sbjct: 526 VNLIEQLRQGGIVKPAMIDKDGRPQPLEHILQLQEELPQQQL 567


>BT023931-1|ABB36435.1| 1135|Drosophila melanogaster RE58741p
           protein.
          Length = 1135

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 46  PMESAEKDPTLLVVPCKEVAIEAMKCLCNITFNSELARNVCV--NTRIAHGLITRMKICK 103
           P E+ +K+P  +    K+  I   K L NI   ++ A++     N R+   L    +   
Sbjct: 6   PRET-QKNPNPIEALSKDEIISKYKGLLNIAKKAKQAKDELTEENHRLKDALKRAAEKQS 64

Query: 104 HIPYKKELMQYDMKLIFILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDE 160
            +P  +E++Q       ILT  + N++ K + +   +      NE     L   SDE
Sbjct: 65  SLPAMQEMVQDFTDKNLILTEEVNNLKRKTKEDADRLTQFEIENESLKRQLGRLSDE 121


>AE014297-1441|AAF54739.2| 1111|Drosophila melanogaster CG3532-PA
           protein.
          Length = 1111

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 46  PMESAEKDPTLLVVPCKEVAIEAMKCLCNITFNSELARNVCV--NTRIAHGLITRMKICK 103
           P E+ +K+P  +    K+  I   K L NI   ++ A++     N R+   L    +   
Sbjct: 6   PRET-QKNPNPIEALSKDEIISKYKGLLNIAKKAKQAKDELTEENHRLKDALKRAAEKQS 64

Query: 104 HIPYKKELMQYDMKLIFILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDE 160
            +P  +E++Q       ILT  + N++ K + +   +      NE     L   SDE
Sbjct: 65  SLPAMQEMVQDFTDKNLILTEEVNNLKRKTKEDADRLTQFEIENESLKRQLGRLSDE 121


>AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-PA
            protein.
          Length = 5303

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 170  APKYYFTD-EDRVIVCELSKALFNLIILPNEDTPTTEK---EKQQFTNLVSVLGKIMTVQ 225
            AP  +  + E+R+++   S+ L N +   N +  ++EK    ++ +  +   + K + + 
Sbjct: 4149 APSSFIEESENRLLILNSSQELLNELNNANLEYLSSEKCVTYQKSYAEIQENIKKTLELL 4208

Query: 226  TSSKSNDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEGRDMTSLVILLQFLKH 285
             + +++ L L   IV LL S+    +  +  E  D    D        + L+ + +  KH
Sbjct: 4209 RTGQNDYLPLAQPIVELLDSVQLKNHTEIAPEAIDLANADTELANIAHSVLMSMQKIYKH 4268

Query: 286  QLTASDERQN 295
             +   +  QN
Sbjct: 4269 HVKTDEVNQN 4278


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,766,687
Number of Sequences: 52641
Number of extensions: 910685
Number of successful extensions: 2000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1988
Number of HSP's gapped (non-prelim): 9
length of query: 493
length of database: 24,830,863
effective HSP length: 88
effective length of query: 405
effective length of database: 20,198,455
effective search space: 8180374275
effective search space used: 8180374275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)