Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
(493 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn pro... 127 2e-29
AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance t... 127 2e-29
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 35 0.15
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 35 0.15
AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 35 0.15
AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 35 0.15
AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (droso... 35 0.15
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 35 0.15
AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical ... 34 0.20
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 31 1.4
U40952-13|AAA81746.1| 237|Caenorhabditis elegans Lamp (lysosome... 31 2.5
AF186848-1|AAD56712.1| 237|Caenorhabditis elegans LMP-1 protein... 31 2.5
Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 29 5.7
U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst compone... 29 5.7
Z81092-2|CAB03145.2| 702|Caenorhabditis elegans Hypothetical pr... 29 9.9
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr... 29 9.9
U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical pr... 29 9.9
AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical ... 29 9.9
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 9.9
>AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn
protein.
Length = 566
Score = 127 bits (306), Expect = 2e-29
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 6/205 (2%)
Query: 290 SDERQNLYEKLSPILTVLNK-CARVRVQRKFLRKAVLPHL--RDVSKPPEQGDELRNHLC 346
S E L + + P VL + C + R++ R V+P L +V K PE+ + LR +
Sbjct: 351 SAEASTLTDLVGPYFQVLARLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIA 410
Query: 347 RLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNXXXXXXXXXXXXXXXXXXYXXXX 406
R++ P +S +D+ AEFLF++CK V+RM+KY GFG+ +
Sbjct: 411 RIMMLP-SSTKDVAAEFLFIICKRSVNRMIKYLGFGHSAGHLANLGLLGQINQPKHASDS 469
Query: 407 XXXXXX-YRRHAHALDPVVGCTRPPP-ADPFRGMTDEQKEYEAMKLVNLFDKMVTAGVVK 464
Y + +++PV G P GM++EQKEYEAMKLV+ ++M+ G+VK
Sbjct: 470 EDSETEDYNQIKDSVNPVTGAIYPSDHGSALAGMSEEQKEYEAMKLVDAMNQMMETGIVK 529
Query: 465 PARVGADGQLQAVEHVLQLREDLPK 489
P +G DG+++ V HVL+L ++ P+
Sbjct: 530 PGTIGDDGKIREVSHVLELLKNAPE 554
>AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 8, isoform a
protein.
Length = 566
Score = 127 bits (306), Expect = 2e-29
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 6/205 (2%)
Query: 290 SDERQNLYEKLSPILTVLNK-CARVRVQRKFLRKAVLPHL--RDVSKPPEQGDELRNHLC 346
S E L + + P VL + C + R++ R V+P L +V K PE+ + LR +
Sbjct: 351 SAEASTLTDLVGPYFQVLARLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIA 410
Query: 347 RLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNXXXXXXXXXXXXXXXXXXYXXXX 406
R++ P +S +D+ AEFLF++CK V+RM+KY GFG+ +
Sbjct: 411 RIMMLP-SSTKDVAAEFLFIICKRSVNRMIKYLGFGHSAGHLANLGLLGQINQPKHASDS 469
Query: 407 XXXXXX-YRRHAHALDPVVGCTRPPP-ADPFRGMTDEQKEYEAMKLVNLFDKMVTAGVVK 464
Y + +++PV G P GM++EQKEYEAMKLV+ ++M+ G+VK
Sbjct: 470 EDSETEDYNQIKDSVNPVTGAIYPSDHGSALAGMSEEQKEYEAMKLVDAMNQMMETGIVK 529
Query: 465 PARVGADGQLQAVEHVLQLREDLPK 489
P +G DG+++ V HVL+L ++ P+
Sbjct: 530 PGTIGDDGKIREVSHVLELLKNAPE 554
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 641 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 698
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 699 IEVMENERVHFEARILPANDVKMT 722
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform b
protein.
Length = 4203
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 558 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 615
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 616 IEVMENERVHFEARILPANDVKMT 639
>AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform d
protein.
Length = 4369
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 879 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 936
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 937 IEVMENERVHFEARILPANDVKMT 960
>AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform c
protein.
Length = 4447
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 879 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 936
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 937 IEVMENERVHFEARILPANDVKMT 960
>AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4889
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 1280 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 1337
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 1338 IEVMENERVHFEARILPANDVKMT 1361
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 ILTALIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
+ T I+ ++L +H D ++ +I YL+ + + P S E NS +APK+ +
Sbjct: 558 LTTVWIDTLQLDSKHAD-SLPIIGYLDS-HQIHIGPQSVERPEEFNSLEAPKFARELAGK 615
Query: 181 VIVCELSKALFNLIILPNEDTPTT 204
+ V E + F ILP D T
Sbjct: 616 IEVMENERVHFEARILPANDVKMT 639
>AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical
protein C17B7.5 protein.
Length = 820
Score = 34.3 bits (75), Expect = 0.20
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 102 CKHIPYKKEL-MQYDMKLIFILTALIENIRLKFRHEDGAMHMINYLNEIY-SESLQPSSD 159
C +IP K L M+Y + +++I L+ENIRL M++ + E+Y E+ + S+
Sbjct: 537 CTNIPTNKSLIMEYPVDMLYINVVLVENIRLFKTDVKDRMNVETFSIEVYWQETPETSTA 596
Query: 160 EASVS 164
VS
Sbjct: 597 TTDVS 601
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 172 KYYFTDEDRVIVCELSKALFNL-IILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKS 230
+ Y +D +I E+ KA N +L N+ + EK Q L + L +V+ +
Sbjct: 493 RLYVSDFSMMIFDEVHKAAKNHPYVLINQMVQEWKYEKPQIIGLTASL----SVKVDGQK 548
Query: 231 NDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEGRDMTSLVI 278
++ ++N+I N+L I+ ++T + + +H+ + D L +
Sbjct: 549 DENQMLNDIYNMLALINAPHLSTITRQSSIDELNEHVGKPDDSVELCL 596
>U40952-13|AAA81746.1| 237|Caenorhabditis elegans Lamp
(lysosome-associated membraneprotein) homolog protein 1
protein.
Length = 237
Score = 30.7 bits (66), Expect = 2.5
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 161 ASVSANSEDAPKYYFTDEDRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGK 220
A +++ S A YY T+ + + C + F ++ NE TTEK F VSV G
Sbjct: 10 AFLASASATASHYYVTNNNTGLTCIILDGDFQFNLVFNEKN-TTEKFTVTFNETVSVEGD 68
Query: 221 IMTVQTSSKSNDLDLMNN 238
V+ + L++ N
Sbjct: 69 CNGVRNNQSVQTLNIKFN 86
>AF186848-1|AAD56712.1| 237|Caenorhabditis elegans LMP-1 protein
protein.
Length = 237
Score = 30.7 bits (66), Expect = 2.5
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 161 ASVSANSEDAPKYYFTDEDRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGK 220
A +++ S A YY T+ + + C + F ++ NE TTEK F VSV G
Sbjct: 10 AFLASASATASHYYVTNNNTGLTCIILDGDFQFNLVFNEKN-TTEKFTVTFNETVSVEGD 68
Query: 221 IMTVQTSSKSNDLDLMNN 238
V+ + L++ N
Sbjct: 69 CNGVRNNQSVQTLNIKFN 86
>Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical
protein T26E4.5 protein.
Length = 339
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 203 TTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQ 262
T KEK+ ++S+LG T+Q + N D NNI NL I LF L E+ K
Sbjct: 67 TELKEKETIFEIISLLGIANTLQRTPVINATD-SNNIRNLQKRIQPLF-PKLVEQFHLKI 124
Query: 263 KPDHIY 268
P Y
Sbjct: 125 IPSFKY 130
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 181 VIVCELSKALFNLIILPN---EDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMN 237
VI+ E +A ++I E+T + E E+Q + + ++ + + + ++L N
Sbjct: 148 VIIAEEDRADTPIVIEDTREFEETYSEEDERQTPIQMENATSEVSSSEDEISDSVVELTN 207
Query: 238 NIVNLLTSIHTLFYMSLTEEIGDKQKPDHI 267
++++ +T I + +E G DH+
Sbjct: 208 DMMSKITEIEEIHAQVHSESFGSSDSGDHL 237
>U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst component
protein 7 protein.
Length = 630
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 202 PTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDL----MNNIVNLLTSIHTLFYMSLTEE 257
P T K Q F LVS VQT N+ D+ + +++LL+ + F+ T
Sbjct: 307 PDTSKRAQVFRELVSRPLAYAVVQTQKVVNEKDIGIVPLLPLLHLLSQNYARFHNLATNS 366
Query: 258 IGDKQ 262
IGD Q
Sbjct: 367 IGDVQ 371
>Z81092-2|CAB03145.2| 702|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 702
Score = 28.7 bits (61), Expect = 9.9
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 108 KKELMQYDMKLIFILTALIENIR---LKFRHEDGAMHMINYLNEIYSESLQPSSDEASVS 164
K EL Y +LI ++AL+E + LK+R + Y+N+I+ S P + V+
Sbjct: 541 KSEL--YLNELIKDVSALMEKLNTVPLKYRANGLEVEFAKYINDIFCVSFDPPGETDEVT 598
Query: 165 ANSED 169
SE+
Sbjct: 599 IKSEN 603
>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
protein F56D5.9 protein.
Length = 1132
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 185 ELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIVNLL 243
+++ LFNL+ + +P TE + + + L KI+ S++ N L +++ + L
Sbjct: 496 KINNNLFNLLNFESFKSPETESASKMVGSYMDDLSKILKALNSARDNTLKKLSDEIKYL 554
>U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical
protein R03H4.6 protein.
Length = 646
Score = 28.7 bits (61), Expect = 9.9
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 107 YKKELMQYDMKLIFILTALIENIRLKFRHEDGAMHMINYLNEIYSE 152
+K+ + ++ ++FI E++RL +H D + +N E Y +
Sbjct: 483 FKRNVAKFKPDVLFISARYSESVRLPIKHNDAYLKQMNENIEFYEK 528
>AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical
protein C04E12.10 protein.
Length = 658
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 102 CKHIPYKKEL-MQYDMKLIFILTALIENIRL 131
C +IP K L M+Y + +++I L +NIRL
Sbjct: 375 CTNIPTNKSLIMEYPVDMLYISVVLSDNIRL 405
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 3058 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 3099
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 3961 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 4002
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 4915 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 4956
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 5818 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 5859
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 6721 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 6762
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 198 NEDTPTTEKEK-QQFTNLVSVLGKIMTVQTSSKSNDLDLMNN 238
NE+ P +K K +Q + + K + Q S K ++LD +NN
Sbjct: 7624 NENLPADDKPKAEQLVSNLEAFVKDVETQVSEKQDELDKLNN 7665
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,690
Number of Sequences: 27539
Number of extensions: 471654
Number of successful extensions: 1278
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 31
length of query: 493
length of database: 12,573,161
effective HSP length: 84
effective length of query: 409
effective length of database: 10,259,885
effective search space: 4196292965
effective search space used: 4196292965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -