GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    29   0.12 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   7.7  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 125 LIENIRLKFRHEDGAMHMINYLNEIYSESLQPSSDEASVSANSEDAPKYYFTDEDR 180
           L ++++   +  D ++ MI Y +E ++   +P+ +++   + S D PKY+  D ++
Sbjct: 508 LNKSLKYSDKERDLSLRMILYFSE-FAYLGKPTKEDSEWPSYSRDEPKYFIFDAEK 562


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 194 IILPNEDTPTTEKEKQQF 211
           +++  + TPTTE E+++F
Sbjct: 489 LVVQEQPTPTTESEERRF 506


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 135 HEDGAMHMINYLNEIYSESLQPSSDEASVSA 165
           H+ GAM  ++YL  +  E  QP+  +   +A
Sbjct: 713 HQPGAMEQVSYLTSL--ERTQPTMSQMPPTA 741


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 440 DEQKEYEAMKLVNLFDKMVTAGV 462
           D+ +EY   KLV+  + +V  GV
Sbjct: 179 DQSQEYVRSKLVDFLNDLVAIGV 201


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,634
Number of Sequences: 429
Number of extensions: 5445
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 493
length of database: 140,377
effective HSP length: 60
effective length of query: 433
effective length of database: 114,637
effective search space: 49637821
effective search space used: 49637821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)