GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001244-TA|BGIBMGA001244-PA|IPR008376|Synembryn
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    33   0.43 
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    33   0.43 
At3g12170.1 68416.m01518 DNAJ heat shock N-terminal domain-conta...    31   2.3  
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc...    31   2.3  
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)...    29   7.0  
At5g61350.1 68418.m07698 protein kinase family protein contains ...    29   9.3  
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o...    29   9.3  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   9.3  

>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 186 LSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIV 240
           +S++  NL+ L + D+PT  +  +Q   +++V G +  +   SK  DL   + I+
Sbjct: 2   VSRSYSNLLELASGDSPTFGRMNRQIPRIMAVAGIMSNIDNDSKDTDLSPKDRII 56


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 186 LSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKSNDLDLMNNIV 240
           +S++  NL+ L + D+PT  +  +Q   +++V G +  +   SK  DL   + I+
Sbjct: 2   VSRSYSNLLELASGDSPTFGRMNRQIPRIMAVAGIMSNIDNDSKDTDLSPKDRII 56


>At3g12170.1 68416.m01518 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI7 DnaJ
           homolog subfamily B member 8 [Mus musculus]; contains
           Pfam profile: PF00226 DnaJ domain
          Length = 262

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 198 NEDTPTTEKEKQQFTNLVSVLG---KIMTVQTSSKSNDLDLMNNIVNLLTSIHTLFYMSL 254
           N+D    +++ QQ   ++S+LG   K      +   +D DL  ++V+ L       Y  +
Sbjct: 43  NKDDEDAKEKFQQLQKVISILGDEEKRAVYDQTGSVDDADLSGDVVDNLRDFFKAMYKKV 102

Query: 255 TEE 257
           TEE
Sbjct: 103 TEE 105


>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
           a2-type [Glycine max] GI:857397, cyclin A-like protein
           [Nicotiana tabacum] GI:1064927; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 460

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 157 SSDEASVSANSEDAPKYYFTDEDRV--IVCELSKALFNLIILPNEDT 201
           S DE   S++S  +P+  + + D V  +V    KAL NL I PN +T
Sbjct: 111 SMDETRSSSDSYKSPQVEYIENDDVSAVVSIERKALSNLFITPNSET 157


>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
           identical to telomerase reverse transcriptase
           [Arabidopsis thaliana] GI:5880683
          Length = 1123

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 173 YYFTDE--DRVIVCELSKALFNLIILPNEDTPTTEKEKQQFTNLVSVLGKIMTVQTSSKS 230
           YY+     +R+I  E+SKAL   +++ + +  ++ K+  +F  L    G  M +  SS S
Sbjct: 572 YYYRKRSWERLISKEISKALDGYVLVDDAEAESSRKKLSKFRFLPKANGVRMVLDFSSSS 631

Query: 231 NDLDL 235
               L
Sbjct: 632 RSQSL 636


>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 228 SKS-NDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEGRDMTSLVILLQ 281
           SKS NDL + N  +N L++I  L   SLT  +G     D +     +T+  IL+Q
Sbjct: 318 SKSLNDL-IFNVFINKLSAISALDLSSLTSALGTAYYADFVLNASTITNGSILVQ 371


>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 641

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 346 CRLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGN 383
           C L   P+T++  L +   F+L + K +R+V+++GF N
Sbjct: 5   CFLRGQPLTTIPSLPSRKGFLLQRWKTNRIVRFSGFKN 42


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 271  RDMTSLVILLQFLKHQLTASDERQNLYEKLSPILTVLNKCARVRVQRK-FLRKAVLPHLR 329
            R+   L ILL  +K   +  D+ ++  E++  +L +LN C ++R  R+  LR   L  L 
Sbjct: 4308 REYGGLEILLDMIK---SLQDDFKSNQEEMVAVLDLLNHCCKIRENRRALLRLGALSLLL 4364

Query: 330  DVSK 333
            + ++
Sbjct: 4365 ETAR 4368


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,405
Number of Sequences: 28952
Number of extensions: 433621
Number of successful extensions: 1031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 8
length of query: 493
length of database: 12,070,560
effective HSP length: 84
effective length of query: 409
effective length of database: 9,638,592
effective search space: 3942184128
effective search space used: 3942184128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)