Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001243-TA|BGIBMGA001243-PA|IPR005326|Plectin/S10,
N-terminal
         (176 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 25  KDYHAPKHTELEKI--PNLQVIKAMQSLKSRGYVKEQ 59
           KD   P    + KI  PN+ +IK    L   G V E+
Sbjct: 242 KDAKVPIIVAINKIDKPNIDIIKVQYELAKHGIVIEE 278


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 147 LEFVSPILLCRIIVDWIEKLQAPETY 172
           L F+ PI    + +  +E++  P+TY
Sbjct: 98  LSFLGPIKSLSLSIKMLERIWRPDTY 123



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 68  YLTNEGIEYLRIFLHLPPEIVPATLKRSVRTE 99
           Y  NE + Y R  + +     P+T++R  +TE
Sbjct: 389 YGVNESVSYERGSMTVSVTSKPSTMERQTQTE 420


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 105 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADV 140
           P  R   P+R    R   RRTP    V+  D+ + +
Sbjct: 394 PPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRI 429


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,796
Number of Sequences: 429
Number of extensions: 2159
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 140,377
effective HSP length: 54
effective length of query: 122
effective length of database: 117,211
effective search space: 14299742
effective search space used: 14299742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)