GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001243-TA|BGIBMGA001243-PA|IPR005326|Plectin/S10,
N-terminal
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   145   3e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   144   9e-36
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   3.6  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   6.3  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   6.3  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   8.4  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  145 bits (352), Expect = 3e-36
 Identities = 74/134 (55%), Positives = 95/134 (70%), Gaps = 5/134 (3%)

Query: 1   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 61  AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 120
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   RS+   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 121 AYRRTPAA-PGVAP 133
            YRR      G AP
Sbjct: 117 GYRRAEKKDDGAAP 130


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  144 bits (348), Expect = 9e-36
 Identities = 72/133 (54%), Positives = 92/133 (69%), Gaps = 4/133 (3%)

Query: 1   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 61  AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 120
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++ D  
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASADAG 116

Query: 121 AYRRTPAAPGVAP 133
             R      G AP
Sbjct: 117 YRRAEKKDEGAAP 129


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 35  LEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEY 76
           L+K  N+ ++   Q+LK +   K+   W+  Y Y +  G  Y
Sbjct: 469 LQKYDNIPLLNEEQALKEKNVEKDFIQWKDDY-YRSKVGFSY 509


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 86  EIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 145
           + V A L  S  T T    P   P  P+    +R      PA P + P        P ++
Sbjct: 211 DFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNS 270

Query: 146 DLEFVSPI 153
               ++P+
Sbjct: 271 PPRPIAPV 278


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 83  LPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAED 118
           +P    PA  ++   +E +++ PV  P  P  S  D
Sbjct: 1   MPSNSTPANEEKEEESEKIQKSPVDTPHTPNGSVSD 36


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 119 RSAYRRT--PAAP-GVAPHDKKADVGPGSADLEFVSPI 153
           R+AY  T  PA P  V P D+K  VG   +D  FV+ +
Sbjct: 145 RNAYSLTYNPAHPWSVIPEDRKVLVGSTRSDSVFVNTV 182


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 109 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 146
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 85  PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 120
           P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 24  KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAW---RHFYWYLTNEGIEYLRIF 80
           +K     K+TE + I + + +    +L + GY  E+  W     F WY T+  + +   +
Sbjct: 215 RKGLEIAKYTETQGIMSARGLLENPALFA-GY--EETPWGCVERFLWYSTSYSLNFHLFY 271

Query: 81  LHLPPEIVPATLKRSVRT 98
            HL   +   T KR   T
Sbjct: 272 HHLTTMMGQMTTKRERMT 289


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,918
Number of Sequences: 5004
Number of extensions: 33090
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 9
length of query: 176
length of database: 2,362,478
effective HSP length: 68
effective length of query: 108
effective length of database: 2,022,206
effective search space: 218398248
effective search space used: 218398248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)