Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001243-TA|BGIBMGA001243-PA|IPR005326|Plectin/S10,
N-terminal
(176 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 145 2e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 145 2e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 138 2e-33
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.69
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.91
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956 29 1.6
07_03_1296 + 25583195-25584385 29 2.1
01_05_0305 + 20659199-20660026,20660147-20660179 29 2.1
03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723... 28 3.7
02_05_0460 - 29224525-29224620,29225525-29226625 28 3.7
12_02_0020 - 12388777-12389062,12389637-12389818 28 4.9
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 4.9
09_01_0084 + 1202545-1202755,1202797-1203488 27 6.4
03_05_0867 - 28381891-28383018 27 6.4
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 27 8.5
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 27 8.5
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 145 bits (351), Expect = 2e-35
Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 7/154 (4%)
Query: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 117
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 118 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEF 149
DR + G P D G G A EF
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEF 152
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 145 bits (351), Expect = 2e-35
Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 7/154 (4%)
Query: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 117
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 118 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEF 149
DR + G P D G G A EF
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEF 152
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 138 bits (335), Expect = 2e-33
Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 7/154 (4%)
Query: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG-RPDAPARSAE 117
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 118 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEF 149
DR + G P D G G A EF
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEF 152
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.69
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 11 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 69
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 70 TNEGIE-YLRIFLHLP 84
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 0.91
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 44 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 100
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 101 VRRGP-----VGRPDAPARSAED 118
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
Length = 397
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 89 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADV 140
P L +R +T+R V P P S ED+ ++ +P P V H + +DV
Sbjct: 102 PQALCARLRHKTLRNATVISPPPPPTSTEDQDQHQPSPRPPLV--HSQVSDV 151
>07_03_1296 + 25583195-25584385
Length = 396
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 81 LHLPPEIVPATLKRSVR--TETVRRGPVGRPDAPARSAEDRSAYRRTPA---APGVAPHD 135
LHL P PA +KRS R + + P DA R ++ A+ + AP +AP
Sbjct: 76 LHLQPNPDPAEVKRSYRRLSNLLSSNPRPGADAALRCVQEAFAHLSDSSANPAPALAPPP 135
Query: 136 KKADVGPGSA 145
A G SA
Sbjct: 136 APASGGDASA 145
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 81 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 132
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>03_05_0894 +
28571015-28571391,28571651-28571768,28572069-28572376,
28572452-28572583,28572672-28572770,28572950-28573487
Length = 523
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 77 LRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYR-RTPAAPGVA 132
LR F HL P P +R+E R P +P +P E + R R+P A +A
Sbjct: 15 LRRFSHLRPPAPPDPRLAFLRSEFDGREPGRQPPSPETREEPKGGERARSPVAVDIA 71
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/41 (41%), Positives = 17/41 (41%)
Query: 105 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 145
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 106 VGRPDAPARSAEDRSAYRRTPAAP 129
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 116 AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFVSPILLCR 157
A R RR AP +AP ++ D G D E S +L R
Sbjct: 17 AARRGCLRRAVPAPRMAPRGRRWDAGCAHVDAEHPSLVLCLR 58
>09_01_0084 + 1202545-1202755,1202797-1203488
Length = 300
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 77 LRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHD 135
LRI P + P +R + +++ + D A A R+ Y R P V P D
Sbjct: 65 LRILDSAPGSVEPTVHRRLLSSDSSDSDNIATADITADLARLRARYSRLATGPPVRPRD 123
>03_05_0867 - 28381891-28383018
Length = 375
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 85 PEIVPATLKRSVRTETVRRGPVGRPDAPARS--AEDRSAYRRTPAAPGVAPHDKKADVGP 142
P PA + + RR P RP +P+ S A A ++ P P P K +
Sbjct: 36 PSAPPAAAAAARKLPVKRRSPPPRPSSPSSSDPASSDPAAKQQPQQP--PPPFKFQRIWS 93
Query: 143 GSADLEFVSPILLC 156
S +L F+ +L C
Sbjct: 94 ESDELRFLQGLLGC 107
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 101 VRRGPVGRPDAPARSAEDRSAY--RRTPAAPGVAPHDKKADVGPGSADLEFVSPILLCRI 158
V PV PD+ ++ +A + + AA GV P+D + DV ++ + P + I
Sbjct: 247 VDSAPVAVPDSQVWASGFSAAIMKKHSVAAKGVKPNDARPDVLVVESNKDHPKPAVSEAI 306
Query: 159 IVDWIEKL 166
++ +EKL
Sbjct: 307 LLSALEKL 314
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 27.1 bits (57), Expect = 8.5
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 90 ATLKRSVRT-ETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 148
AT R+V E + PVG P A S+ +A + P A AP V P A +
Sbjct: 35 ATAVRAVHAAEPSKNPPVGVPSAAKTSSPSVAAPEKAPVAAAPAP------VAPAPAATK 88
Query: 149 FVSPILLCRIIVD-WIEK--LQAPE 170
V+P R VD W K LQ PE
Sbjct: 89 QVAP---ARWAVDSWRTKKALQLPE 110
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,496,199
Number of Sequences: 37544
Number of extensions: 232670
Number of successful extensions: 630
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 17
length of query: 176
length of database: 14,793,348
effective HSP length: 77
effective length of query: 99
effective length of database: 11,902,460
effective search space: 1178343540
effective search space used: 1178343540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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