Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001243-TA|BGIBMGA001243-PA|IPR005326|Plectin/S10,
N-terminal
(176 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 137 4e-33
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.80
Z81038-14|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 5.6
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 5.6
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 5.6
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 5.6
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.4
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 7.4
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 7.4
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 7.4
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 7.4
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 7.4
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.8
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 27 9.8
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 27 9.8
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 9.8
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 9.8
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 9.8
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 9.8
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 9.8
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 27 9.8
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 137 bits (332), Expect = 4e-33
Identities = 73/136 (53%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 60
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 120
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119
Query: 121 AYRR---TPAAPGVAP 133
AYR T A PG AP
Sbjct: 120 AYRTEKVTEAGPGGAP 135
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 133
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z81038-14|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 108 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 148
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 108 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 148
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDE 319
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 146
G +P A ++ A+D SAY+RT H +K + PG +D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 103 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 145
+GP G+P P + A R PA AP A PG A
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQA 194
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 89 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 136
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 89 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 136
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 100 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 128
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 145
GP G P AP E S R+ ++PG A P GP A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 145
GP G P AP E S R+ ++PG A P GP A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 83 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 139
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 140 VGPGSADLEFVSP 152
V PG+ P
Sbjct: 381 VNPGTPSTTIKKP 393
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 83 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 139
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 140 VGPGSADLEFVSP 152
V PG+ P
Sbjct: 381 VNPGTPSTTIKKP 393
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 29 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 72
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 83 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 139
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 140 VGPGSADLEFVSP 152
V PG+ P
Sbjct: 381 VNPGTPSTTIKKP 393
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 83 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 139
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 140 VGPGSADLEFVSP 152
V PG+ P
Sbjct: 381 VNPGTPSTTIKKP 393
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 85 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 123
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 85 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 123
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 72 EGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 108
E IE +R P I P L++ E + RGP R
Sbjct: 285 EFIELMREIRKQNPHITPTELQKQAEYEMISRGPKSR 321
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 72 EGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 108
E IE +R P I P L++ E + RGP R
Sbjct: 285 EFIELMREIRKQNPHITPTELQKQAEYEMISRGPKSR 321
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 72 EGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 108
E IE +R P I P L++ E + RGP R
Sbjct: 285 EFIELMREIRKQNPHITPTELQKQAEYEMISRGPKSR 321
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G P AP + D P P P AD PG+
Sbjct: 225 GPQGPPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 72 EGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 108
E IE +R P I P L++ E + RGP R
Sbjct: 285 EFIELMREIRKQNPHITPTELQKQAEYEMISRGPKSR 321
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 39 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 95
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVA 132
G G P +P + ED + TP APG A
Sbjct: 198 GNPGAPGSPGKPGEDGKSEPITPGAPGPA 226
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 104 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 144
GP G P AP + D P P P AD PG+
Sbjct: 230 GPQGPPGAPGQPGHDGQPGTPGPKGPNGNPGAPGADGNPGT 270
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,571,759
Number of Sequences: 27539
Number of extensions: 191846
Number of successful extensions: 642
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 53
length of query: 176
length of database: 12,573,161
effective HSP length: 77
effective length of query: 99
effective length of database: 10,452,658
effective search space: 1034813142
effective search space used: 1034813142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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