Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001241-TA|BGIBMGA001241-PA|IPR001404|Heat shock protein
Hsp90, IPR003594|ATP-binding region, ATPase-like,
IPR009079|Four-helical cytokine
         (658 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   7.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 235 SNFVSSP--IFLNNDQVNSIKPLWLFEPKEITQEQHIEFYKFISNSY 279
           + F++ P  + L ++  + I P +L     I +E+H+E  + I N Y
Sbjct: 348 AEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNYY 394


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 235 SNFVSSP--IFLNNDQVNSIKPLWLFEPKEITQEQHIEFYKFISNSY 279
           + F++ P  + L ++  + I P +L     I +E+H+E  + I N Y
Sbjct: 348 AEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNYY 394


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,764
Number of Sequences: 429
Number of extensions: 7048
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 658
length of database: 140,377
effective HSP length: 62
effective length of query: 596
effective length of database: 113,779
effective search space: 67812284
effective search space used: 67812284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)