GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001241-TA|BGIBMGA001241-PA|IPR001404|Heat shock protein
Hsp90, IPR003594|ATP-binding region, ATPase-like,
IPR009079|Four-helical cytokine
         (658 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   5.0  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   5.0  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 479 IEVLFCYEM--YDELV-LLELKEFGGRALVSVENDMQRDPLDKSESIIGSEGLQQSQVDE 535
           + VL  +EM   +EL  L+ LKE      + +      +   K   +  + GL+Q+ V  
Sbjct: 67  VSVLDDWEMTGLEELAHLMSLKEKNPNVKILLSMGGWNEGSQKYSQVAANPGLRQAMVTS 126

Query: 536 LISFL 540
           ++SF+
Sbjct: 127 VLSFI 131


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 479 IEVLFCYEM--YDELV-LLELKEFGGRALVSVENDMQRDPLDKSESIIGSEGLQQSQVDE 535
           + VL  +EM   +EL  L+ LKE      + +      +   K   +  + GL+Q+ V  
Sbjct: 67  VSVLDDWEMTGLEELAHLMSLKEKNPNVKILLSMGGWNEGSQKYSQVAANPGLRQAMVTS 126

Query: 536 LISFL 540
           ++SF+
Sbjct: 127 VLSFI 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,769
Number of Sequences: 317
Number of extensions: 5581
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 658
length of database: 114,650
effective HSP length: 61
effective length of query: 597
effective length of database: 95,313
effective search space: 56901861
effective search space used: 56901861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)