Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001241-TA|BGIBMGA001241-PA|IPR001404|Heat shock protein
Hsp90, IPR003594|ATP-binding region, ATPase-like,
IPR009079|Four-helical cytokine
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 220 6e-58
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 31 0.67
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 29 1.5
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 1.5
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 1.5
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 29 2.7
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 6.3
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 6.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 6.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 8.3
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 8.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 8.3
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 220 bits (537), Expect = 6e-58
Identities = 131/414 (31%), Positives = 221/414 (53%), Gaps = 17/414 (4%)
Query: 247 DQVNSIKPLWLFEPKEITQEQHIEFYKFISNSYDKPRFTLHYKTDAPLSIRSILYVPEGK 306
+++N KP+W P E+T+E++ FYK ++N ++ H+ + L R+IL+VP
Sbjct: 263 EELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRA 322
Query: 307 P-GLFELSRDSDVGVALYSRKILIKSKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNS 365
P LFE R + + LY R++ I E ++P+WL F+KGVVDSED+PLNLSRE+LQ +
Sbjct: 323 PMDLFEAKRKKN-NIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQN 381
Query: 366 ALITKLRTVLTNRFLKFMVEMSQKDPLQYEAFYKDYSIFLKEGIVTSQSPLEKEEIAKLL 425
++ +R L R L E+++ D ++ FY +S LK GI + + +AKLL
Sbjct: 382 KIMKVIRKNLVRRCLDMFNEIAE-DKENFKTFYDAFSKNLKLGI--HEDAANRPALAKLL 438
Query: 426 RFESSKLSNGQRTSLSDYSSRQKDDQKSIFYLAAPSRELAETSPYYESLKKRDIEVLFCY 485
R+ S S SL DY ++ + QK+I+++ S++ E SP+ E + + +VLF
Sbjct: 439 RYNSLN-SPDDLISLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMV 497
Query: 486 EMYDELVLLELKEFGGRALVSVEND-MQRDPLDKSESIIGSEGLQQSQVDELISFLKTNL 544
+ DE + +LKEF G+ LV++ D ++ + D+ ++ E L++ + +E LKT L
Sbjct: 498 DPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKA--AREKLEK-EYEEFAKQLKTIL 554
Query: 545 TGKVFDVRTTQKLDSHPCVIVVPE---MAAARHFIRTQAQNLTEENRFALLRPQLEINAK 601
KV V + K+ PC++ + A ++ QA T + + R EIN K
Sbjct: 555 GDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRKTFEINPK 614
Query: 602 HPIVKKLHKLM---STDKELATMVAQQLFSNAMVTAGLVM-DPRNLITHINDLL 651
PI+ +L K + + +A L+ A++++G + DP IN L+
Sbjct: 615 SPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLI 668
Score = 179 bits (436), Expect = 1e-45
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 12/214 (5%)
Query: 34 SEKREFQAETRMLLDIVARSLYSDKEVFIRELISNASDALEKFRYLSVSSVPESGNLKEL 93
+E +F+AE L+ ++ ++YS+KE+F+RELISNASDAL+K RY S+S P + +
Sbjct: 4 TETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSD-PHA---LDA 59
Query: 94 DRPLEIRLTTDKQNRTITFQDSGIGMTKEELTQNLGTIARSGSKSFIEEIKKQGAEQASS 153
++ L IR+T DK+N+ ++ +D+GIGMTK +L NLG IA+SG+K F+ E GA+ S
Sbjct: 60 EKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFM-EAAASGAD--IS 116
Query: 154 IIGQFGVGFYSAFMVADKIEVFTRSSKGDSPGYQWSSDGSGTYEIQ-EADGVEI--GTKI 210
+IGQFGVGFYSA++VADK++V S D Y W S G++ + + DG + GT+I
Sbjct: 117 MIGQFGVGFYSAYLVADKVQVV--SKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEI 174
Query: 211 VVYLKTDCREFADDDTVKSIIKKYSNFVSSPIFL 244
+++K D ++ ++ T+K +KK+S F+S PI L
Sbjct: 175 RLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQL 208
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 30.7 bits (66), Expect = 0.67
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 121 KEELTQNLGTIARSGSKSFIEEIKKQGAEQASSIIGQFGVGFYSAFMVADKIE---VFTR 177
K E + L T +++ ++ + ++ AE+A S + + GV F +A+ IE V T
Sbjct: 172 KSEKSPFLST-SKNSDANYSKTTNQKEAEKAVSQLFEVGVRFND--FIAEGIEPSVVHTL 228
Query: 178 SSKGDSPGYQWSSDGSGTYEIQEADGVEIGTKIVVYLKTDCREFADDDTVKSIIKKYSNF 237
K SS GS T +A KI L +D D+ +++ + N
Sbjct: 229 FLKLGLDSSSASSQGSLTLSADKAARSAKLRKIDSNL-SDTHILPGDNGTPTVLPERKNL 287
Query: 238 VSSPIFLNNDQVNSIKPLWLFEPKEITQ 265
+S P+ +D ++S KP P + +
Sbjct: 288 ISLPLLKQDDWLSSSKPFGSSTPNVVIE 315
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 213 YLKTDCREFADDDTVKSIIKKYSNFVSSPIFLNNDQVNSIKPLWLF 258
Y+++ E ++DD S Y N++ +L + VNS+K + F
Sbjct: 274 YIRSQSTETSEDDDSSSFDDDYQNYLKQEPWLAHSSVNSLKDVAKF 319
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 11 KLKEFQHFSTVTEKQSSESLKGKSEKREFQAETRMLLDIVARSLYSDKEVF-IRELISNA 69
K +E +H T+K +E++ K+ E+ +TR LD + +++E +E+++ A
Sbjct: 558 KYREAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKA 617
Query: 70 SDAL 73
D L
Sbjct: 618 EDWL 621
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.5 bits (63), Expect = 1.5
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 35 EKREFQAETRMLLDIVARSLYSDKEVFIRELISNASDALEKF-RYLSVSSVPESGNLKEL 93
EKR +A R +L+ R+L + + E+ +N + +++F R + + E ++
Sbjct: 41 EKRRIEARNR-ILESEGRALENKTHLNEEEIRTN--ERVKRFQRRVDEWTALEIERESQV 97
Query: 94 DRPLEIRLTTDKQNRTITFQDSGIGMTKEELTQNLGTI-ARSGSKSFIEE 142
PL + ++QNRT+ F SG+ + + GT+ G+ + ++E
Sbjct: 98 QPPLWYQRDREEQNRTLNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQE 147
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 123 ELTQNLGTIARSGSKSFIEEIKKQGAEQASSIIGQFGVGFYSAFMVADKIEVFTRSSKGD 182
EL+ + G SF++ +Q ++A+ I FY + D+ T +SK D
Sbjct: 8 ELSNSYGFYKNGRRVSFVKATSEQSLDEATFIEKGSAQAFYHSLFENDRDNSHTMNSKRD 67
Query: 183 SPGY 186
G+
Sbjct: 68 EAGF 71
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 40 QAETRMLLDIVARSLYSDKEVFIRELISNASDALEKFRYLSVSSVPESGNLKELDRPLE 98
Q R+L D+ +S S VF S AS ++E F Y S + +P +L ++ PLE
Sbjct: 345 QLSQRLLEDVNVKSCGSCAAVFA----SLASISVETFNYCSCNFLPSVLDLPMVNEPLE 399
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 67 SNASDALEKFRYLSVSSVPESGNLKELDRPLEIRLTTDKQNRTITFQDSGIGMTKEELTQ 126
S SD F +++ +LK + PL R T KQNR + F +++ ++
Sbjct: 39 SRLSDGALNFTGGRIATPLPQPSLKTPESPLSKRNPTIKQNR-VRFDLPDDELSRSNVSS 97
Query: 127 NLGTIARSGSKSFIEEIKKQ 146
T+ S S S + +KK+
Sbjct: 98 PEKTLLTSASTSTFDSLKKE 117
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 6.3
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 401 YSIFLKEGIVTSQSPLEKEEIAKLLRFESSKLS----NGQRTSLSDYSSRQKDDQKSI-- 454
Y+ + + S L++ ++A R E K N + + ++ +Q QK +
Sbjct: 392 YASLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLNNRVSEINSSLEKQLTTQKELRS 451
Query: 455 -FYLAAPSRELAETSPYYESLKKRDIEVLFCYEMYDELVLLELKEFGGRALVSVEN 509
F + P + + + + ++K D+ + + Y+ LLEL + AL SVEN
Sbjct: 452 RFEILFPVK--LQREDFTKDVEKSDLWIKSLRQEYESKNLLELLDKHQTALSSVEN 505
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 59 EVFIRELISNASDALEKFRYLSVSSVPESGNLKELDRPLE 98
++ EL+S AS+ L +F V +PES K L +E
Sbjct: 407 QIVYPELLSIASERLLRFEDAVVELIPESATAKYLQEDVE 446
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 324 SRKILIKSKAENILPKWLRFVKGVVDSEDIPLNL 357
SR +LIK KA+N++ R + ++ SE+I L++
Sbjct: 985 SRSVLIKPKADNVI--LFRLKRFIMSSEEINLDI 1016
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.1 bits (57), Expect = 8.3
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 10 SKLKEFQHFSTVTEK-QSSESLKGKSEKREFQAETRMLLDIVARSLYSDKEVFIRELISN 68
SK E H +TE ++ ES+ KS E++ ++ +++RSL +K
Sbjct: 526 SKSTEALHSGNLTEHLKTVESILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNSFAIL 585
Query: 69 ASDALEKFRYLSVSSVPE-SGN---LKELDRPLEIRLTTDKQ 106
LE L++ S+PE G +++ L + +T DKQ
Sbjct: 586 TKILLEDL--LNMLSLPEWCGTETIIRQFAMNLVMTVTNDKQ 625
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,269
Number of Sequences: 5004
Number of extensions: 122217
Number of successful extensions: 427
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 14
length of query: 658
length of database: 2,362,478
effective HSP length: 77
effective length of query: 581
effective length of database: 1,977,170
effective search space: 1148735770
effective search space used: 1148735770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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