GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001241-TA|BGIBMGA001241-PA|IPR001404|Heat shock protein
Hsp90, IPR003594|ATP-binding region, ATPase-like,
IPR009079|Four-helical cytokine
         (658 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    29   0.52 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    26   3.6  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       25   6.4  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 515 PLDKSESIIGSEGLQQSQVDELISFLKTNLTGKVFDVRTTQKLDSHPCVIVVPEMAA--A 572
           PL +  ++IG  G  +S   + ISF+    T  +   + T+ ++       +   A+  A
Sbjct: 29  PLKRFSAVIGPNGSGKSNFMDAISFVMGEKTSSLRVRKLTELINGASIGRPISNRASVMA 88

Query: 573 RHFIRTQAQNLTEEN-RFALLRPQLEINAKHPIVKKLHKLMSTDK 616
           R  I+T+A+   E+  + +++    E      +V   H L   +K
Sbjct: 89  RFIIKTEAEGEVEKTFQRSVINASSEYRINGSVVSPQHYLAELEK 133


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 417 EKEEIAKLLRFESSKLSNGQRTSLSDYSSRQKDD 450
           E EE+  +LR E S+L+     +L+ Y  ++ DD
Sbjct: 25  EGEEVLGILRQERSQLNTWVTVALAYYKQKKTDD 58


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 89  NLKELDRPLEIRLTTDKQNRTITF 112
           NLK + R  E+R  T +Q+RT+ F
Sbjct: 564 NLKTVLRAEEVRHRTKRQSRTVNF 587


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,730
Number of Sequences: 2123
Number of extensions: 23048
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 3
length of query: 658
length of database: 516,269
effective HSP length: 68
effective length of query: 590
effective length of database: 371,905
effective search space: 219423950
effective search space used: 219423950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)