Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.4  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   6.4  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   8.5  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   8.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   8.5  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   8.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.5  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           LL T F+CI       V+ TV V +  H T
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           LL T F+CI       V+ TV V +  H T
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           LL T F+CI       V+ TV V +  H T
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           L+ T F+CI       V+ TV V +  H T
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           L+ T F+CI       V+ TV V +  H T
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHRT 302


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 4   LEVVCGFLLLCDSKK 18
           L  +CG +L+CDS K
Sbjct: 285 LVAMCGLVLICDSAK 299


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 227 LGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHATNE 261
           +GVL      C+ L+++R+++  V  +SI +   E
Sbjct: 57  IGVLYCMKCECVPLQKKRRIVARVQCRSIKNECPE 91


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 223 AVFKLGVLLSTVFSCIRLRQ 242
           A  ++G+L S VF C  LR+
Sbjct: 36  ASLQVGILDSLVFKCYNLRR 55


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
           VY H    +     +YQ  YF+    +F+   ++LG L
Sbjct: 116 VYIHSGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPL 153


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
           VY H    +     +YQ  YF+    +F+   ++LG L
Sbjct: 116 VYIHGGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPL 153


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
           VY H    +     +YQ  YF+    +F+   ++LG L
Sbjct: 116 VYIHGGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPL 153


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
           VY H    +     +YQ  YF+    +F+   ++LG L
Sbjct: 116 VYIHGGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPL 153


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
           VY H    +     +YQ  YF+    +F+   ++LG L
Sbjct: 116 VYIHGGAFMTGYGSFYQPDYFIDKNIVFVNLNYRLGPL 153


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 114 YYAMPDFEQFTASVDLAQTE 133
           Y A+P+  +  AS+ L QT+
Sbjct: 145 YLALPERAELAASLGLTQTQ 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,776
Number of Sequences: 317
Number of extensions: 3136
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 14
length of query: 302
length of database: 114,650
effective HSP length: 56
effective length of query: 246
effective length of database: 96,898
effective search space: 23836908
effective search space used: 23836908
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)