Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 33 0.28
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 33 0.37
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664... 31 0.86
03_01_0487 - 3704763-3705416 31 1.1
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043... 31 1.5
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 29 3.5
12_01_1014 - 10309444-10309905 29 4.6
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 29 6.1
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 37 FYYLALVLMAAGLTMCATAALGCWAT--YLPGYAALSIYFLIVLSLLLCECAGGVLAAVW 94
F+ LAL + A M AA G W Y+P +++ FL+V ++ + C G ++ +W
Sbjct: 505 FFVLALAVCA----MREVAAHGKWRAEPYIPSVTGMAVSFLLVPAVSIDMCIGSLIVFLW 560
Query: 95 PR 96
R
Sbjct: 561 NR 562
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 199 GCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHA 258
G + K+E+ + Y+ ML F LG+ L +RL R L V IDH
Sbjct: 640 GLVRKVEKGITRWYYPSMLDDLAFDSAALGIALEKPLDLVRLYLSRATLIVVPANLIDHW 699
Query: 259 TNE 261
T +
Sbjct: 700 TTQ 702
>06_03_1510 +
30665857-30666038,30666137-30666236,30666358-30666438,
30666514-30666618,30666722-30666916,30667440-30667501,
30667870-30667885,30668007-30668068,30668933-30668951
Length = 273
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 36 PFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECA 86
P + LMAAGL C GC A + L Y ++ + ++L E A
Sbjct: 58 PDLWFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLLEAA 108
>03_01_0487 - 3704763-3705416
Length = 217
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 214 VLMLSIF-IFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHATNENMYGS 266
V++L F + V ++G L+ C+ L+ LH + V S++ A N + +GS
Sbjct: 2 VILLQAFKLLNVKEIGYKLTHQIKCLELQATEYSLHHIKVTSVEVAANTSSHGS 55
>04_04_1347 +
32803664-32803796,32803891-32804093,32804202-32804383,
32804514-32804798,32804901-32804959,32805052-32805088,
32805186-32805257,32805336-32806005
Length = 546
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 200 CIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
C K + YF+ ++ + IF L+T+ CI L +++ H+ T+K++D+
Sbjct: 146 CRKKYNTYSPATYFISLILLIIFT-------LATIAGCIILHCGQELFHSSTIKTVDYIV 198
Query: 260 NE 261
+
Sbjct: 199 GQ 200
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 84 ECAGGVLAAV-----WPRCLGLENARGGSVGA 110
E G V AA+ WP CLG + RGG+ GA
Sbjct: 107 EADGSVQAAMETGEAWPACLGGDRGRGGAAGA 138
>12_01_1014 - 10309444-10309905
Length = 153
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 4 LEVVCGFLLLCDSKKILLSRLLASPESNLG-HPPFYYLALVLMAAGLTMCATAALGCWAT 62
L VV G LL + + + LASP ++L PFY + + AG+T A + C
Sbjct: 30 LPVVVGIFLLNLALTLFMVVNLASPLADLHVMRPFYDIDQANLTAGVTTAAADTVTCSMV 89
Query: 63 YLPGYAA 69
PG A
Sbjct: 90 AAPGGGA 96
>07_03_0436 -
18188221-18188373,18189121-18189233,18189817-18189889,
18189979-18190046,18190132-18190372,18191614-18191732,
18192977-18193028,18193178-18193192
Length = 277
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 142 NYDMSVWQLRRLGPRGMAVPLSCCVQIEENISYLNPMPVNLSRCQEYQPNP 192
N D S + RR GP GMA C + EN+++ N+ +C +P+P
Sbjct: 178 NNDSSASRKRRGGPDGMAENDWICPKC-ENVNFSFRNSCNMKKCGAPRPSP 227
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,027
Number of Sequences: 37544
Number of extensions: 374048
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 9
length of query: 302
length of database: 14,793,348
effective HSP length: 82
effective length of query: 220
effective length of database: 11,714,740
effective search space: 2577242800
effective search space used: 2577242800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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