Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.62 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 101 ENARGGSVGALQSYYAMPDFEQFT 124
           EN R   +G+ ++YY+  + +QFT
Sbjct: 373 ENRRNSCLGSTETYYSKHNTQQFT 396


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           LL + F+CI       V+ TV V +  H T
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHRT 353


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 239 RLRQRRQVLHTVTVKSIDHATNENMYGSGVREDH 272
           RL     + H        H T+EN + S +  DH
Sbjct: 217 RLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDH 250


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           L+ + F+CI       V+ TV V +  H T
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHRT 353


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,909
Number of Sequences: 429
Number of extensions: 4105
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 302
length of database: 140,377
effective HSP length: 57
effective length of query: 245
effective length of database: 115,924
effective search space: 28401380
effective search space used: 28401380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)