GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   7.6  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 203 KLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQR-RQVLHTVTVKSIDHATNE 261
           +  ++Y +   +L L   I   +   +LL  +FS I L+ R RQ ++++T++    A++ 
Sbjct: 463 QFHQFYGESIDLLPLGNLISKRYPTFILLPIIFSMISLKYRLRQFIYSITLRKSSSASSS 522

Query: 262 N 262
           +
Sbjct: 523 D 523


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 59  CWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGLENARGGSVGALQSYYAMP 118
           C    L  +A+ SI  L     LL     G  A + P       + GGS   L+ YY + 
Sbjct: 302 CLREALKKFASQSIVLLKNKKKLLPLSRKGTFAVIGPNAKVCNYSGGGSAN-LKPYYTVS 360

Query: 119 DFEQFTASVD 128
            ++   A +D
Sbjct: 361 MYDGIAAKID 370


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,041
Number of Sequences: 5004
Number of extensions: 54454
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 2
length of query: 302
length of database: 2,362,478
effective HSP length: 72
effective length of query: 230
effective length of database: 2,002,190
effective search space: 460503700
effective search space used: 460503700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)