GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970...    33   0.28 
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    33   0.37 
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    31   0.86 
03_01_0487 - 3704763-3705416                                           31   1.1  
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043...    31   1.5  
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910...    29   3.5  
12_01_1014 - 10309444-10309905                                         29   4.6  
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898...    29   6.1  

>01_06_1221 -
           35495427-35496542,35496650-35496839,35496988-35497061,
           35497407-35497573,35497685-35498018
          Length = 626

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 37  FYYLALVLMAAGLTMCATAALGCWAT--YLPGYAALSIYFLIVLSLLLCECAGGVLAAVW 94
           F+ LAL + A    M   AA G W    Y+P    +++ FL+V ++ +  C G ++  +W
Sbjct: 505 FFVLALAVCA----MREVAAHGKWRAEPYIPSVTGMAVSFLLVPAVSIDMCIGSLIVFLW 560

Query: 95  PR 96
            R
Sbjct: 561 NR 562


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/63 (30%), Positives = 27/63 (42%)

Query: 199 GCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHA 258
           G + K+E+   + Y+  ML    F    LG+ L      +RL   R  L  V    IDH 
Sbjct: 640 GLVRKVEKGITRWYYPSMLDDLAFDSAALGIALEKPLDLVRLYLSRATLIVVPANLIDHW 699

Query: 259 TNE 261
           T +
Sbjct: 700 TTQ 702


>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 36  PFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECA 86
           P  +    LMAAGL  C     GC A  +     L  Y ++ + ++L E A
Sbjct: 58  PDLWFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLLEAA 108


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 214 VLMLSIF-IFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHATNENMYGS 266
           V++L  F +  V ++G  L+    C+ L+     LH + V S++ A N + +GS
Sbjct: 2   VILLQAFKLLNVKEIGYKLTHQIKCLELQATEYSLHHIKVTSVEVAANTSSHGS 55


>04_04_1347 +
           32803664-32803796,32803891-32804093,32804202-32804383,
           32804514-32804798,32804901-32804959,32805052-32805088,
           32805186-32805257,32805336-32806005
          Length = 546

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 200 CIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           C  K   +    YF+ ++ + IF        L+T+  CI L   +++ H+ T+K++D+  
Sbjct: 146 CRKKYNTYSPATYFISLILLIIFT-------LATIAGCIILHCGQELFHSSTIKTVDYIV 198

Query: 260 NE 261
            +
Sbjct: 199 GQ 200


>04_03_0562 +
           17190443-17190520,17190715-17190853,17190943-17191034,
           17191681-17191989,17192817-17193506
          Length = 435

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)

Query: 84  ECAGGVLAAV-----WPRCLGLENARGGSVGA 110
           E  G V AA+     WP CLG +  RGG+ GA
Sbjct: 107 EADGSVQAAMETGEAWPACLGGDRGRGGAAGA 138


>12_01_1014 - 10309444-10309905
          Length = 153

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 4  LEVVCGFLLLCDSKKILLSRLLASPESNLG-HPPFYYLALVLMAAGLTMCATAALGCWAT 62
          L VV G  LL  +  + +   LASP ++L    PFY +    + AG+T  A   + C   
Sbjct: 30 LPVVVGIFLLNLALTLFMVVNLASPLADLHVMRPFYDIDQANLTAGVTTAAADTVTCSMV 89

Query: 63 YLPGYAA 69
            PG  A
Sbjct: 90 AAPGGGA 96


>07_03_0436 -
           18188221-18188373,18189121-18189233,18189817-18189889,
           18189979-18190046,18190132-18190372,18191614-18191732,
           18192977-18193028,18193178-18193192
          Length = 277

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 142 NYDMSVWQLRRLGPRGMAVPLSCCVQIEENISYLNPMPVNLSRCQEYQPNP 192
           N D S  + RR GP GMA     C +  EN+++      N+ +C   +P+P
Sbjct: 178 NNDSSASRKRRGGPDGMAENDWICPKC-ENVNFSFRNSCNMKKCGAPRPSP 227


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,027
Number of Sequences: 37544
Number of extensions: 374048
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 9
length of query: 302
length of database: 14,793,348
effective HSP length: 82
effective length of query: 220
effective length of database: 11,714,740
effective search space: 2577242800
effective search space used: 2577242800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)