Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 42 5e-04
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 41 0.001
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 36 0.041
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 33 0.22
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 33 0.29
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 32 0.50
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 31 1.5
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2) 29 3.5
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081) 28 8.2
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 28 8.2
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 42.3 bits (95), Expect = 5e-04
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 20/199 (10%)
Query: 42 LVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGLE 101
++ + G+ A L C L YF +V ++ E VLA V+ +E
Sbjct: 60 ILCIVIGIVTVIVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRE--RIE 117
Query: 102 NARGGSVGALQSYYAMPDFEQFTASVDLAQTE--CCGMTDARNYDMSVWQLRRLGPRGMA 159
G + + + Y + + T ++D + CCG R++ + W + P
Sbjct: 118 KNLHGDIRSTMNEYHLSGHDAVTRAIDEIHRDFKCCGNAQYRDWFETKW--AKTHPD--M 173
Query: 160 VPLSCCVQIEENISYLNPMPVNLSRCQEYQPNPVYRHVPGCIGKLEEWYQKQYFVLM-LS 218
VP SCC + + S N N+S+ P +YR GC ++++ V+
Sbjct: 174 VPRSCCK--DPSDSKCNE---NISK----DPTKIYRR--GCYMFVKKYLSNNLHVISGFG 222
Query: 219 IFIFAVFKLGVLLSTVFSC 237
I+I + +G++ +T C
Sbjct: 223 IWIAVIQLMGIIFATCLCC 241
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 41.1 bits (92), Expect = 0.001
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 38 YYLALVLMAAGLTMCATAALGCWATYLPGYAALSIY-FLIVLSLLLCECAGGVLAAVWPR 96
Y ++V++ G+ + A +GC L+IY + L L+L AG AV+
Sbjct: 79 YEPSVVILIVGILLFLIATVGCIGALRENTILLAIYGGAVTLCLILLVSAG---TAVY-- 133
Query: 97 CLGLENARGGSVGALQSYYAMPDFEQFTASVDLAQT--ECCGMTDARNYDMSVW-QLRRL 153
+ + LQ +Y PD E F +D QT +CCG+ ++ +V+
Sbjct: 134 -IHRDKVVAKLKDDLQ-HYRDPDKENFQFLIDRLQTNLKCCGINSYNDWQTNVYFNCSSP 191
Query: 154 GPRGMAVPLSCC---VQIEENISY 174
G VP SCC +Q+ Y
Sbjct: 192 GSESCGVPFSCCKESIQLNRQCGY 215
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 39.9 bits (89), Expect = 0.003
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 43 VLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGLEN 102
V++A G + A LGC + L +F +L LL+ E GG LA + +EN
Sbjct: 56 VVIAVGFIIALVAFLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALA--YNNKDKIEN 113
Query: 103 ARGGSV-GALQSYYAMPDFEQFTASVDLAQTECCGMTDARNYDMSVWQLRRLGPRGMAVP 161
+ A+++Y P + + + + +CCG A NY + WQ +VP
Sbjct: 114 RLDKDILKAIENY---PGKNEKSINDMQTKFKCCG---ADNY--TDWQSNIKMKNSSSVP 165
Query: 162 LSCC 165
SCC
Sbjct: 166 DSCC 169
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 38.7 bits (86), Expect = 0.006
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 38 YYLALVLMAAGLTMCATAALGCWATYLPGYAALSIY-FLIVLSLLLCECAGGVLAAVWPR 96
Y ++V++ G+ + A +GC L+IY + L L+ AG +A +
Sbjct: 79 YEPSVVILIVGILLFLIATVGCIGALRENTILLAIYGGAVTLCLIFLVSAG--IAVYMHQ 136
Query: 97 CLGLENARGGSVGALQSYYAMPDFEQFTASVDLAQT--ECCGMTDARNYDMSVW-QLRRL 153
+E + +Y PD E F +D QT +CCG+ ++ +++
Sbjct: 137 DKVVEKLKDD-----LKHYRDPDKENFQFLIDRLQTNLKCCGVNSYTDWQTNIYFNCSSP 191
Query: 154 GPRGMAVPLSCC---VQIEENISY 174
G VP SCC +Q+ Y
Sbjct: 192 GSESCGVPFSCCKESIQLNRQCGY 215
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 35.9 bits (79), Expect = 0.041
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 39 YLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCL 98
Y+ +L G ++ GC L+ Y + + L+ A GVLA + L
Sbjct: 71 YMPTLLFFTGFSLYLIVFFGCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKL 130
Query: 99 GLENARGGSVGALQSYYAMPDFEQFTASVDLAQT--ECCGMTDARNYDMS-VWQLRRLGP 155
AR L+SY ++F +D QT +CCG+ +++ + + P
Sbjct: 131 VDPKAR--LEDGLKSYQQDSSKQEF---IDFIQTRFKCCGIESYKDWQANRYFSCSSPVP 185
Query: 156 RGMAVPLSCC 165
VP SCC
Sbjct: 186 TACGVPFSCC 195
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 185 CQEYQPNPVYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQR- 243
C E + C KL +W Q Y VL + AV +L +L ST +
Sbjct: 96 CYEGMNKATGTRLTDCYSKLTQWIQNNYVVLASVAVVVAVAELFILASTCRLLSKTESND 155
Query: 244 RQVLHTVTVKSIDHATNENMYGSGVRE 270
RQ+ + + +T + YG+ RE
Sbjct: 156 RQIRQVKVAPAPNTSTMKQTYGNTKRE 182
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.9 bits (74), Expect = 0.16
Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 6/176 (3%)
Query: 41 ALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGL 100
A L+ G M GC L + +++ + + A GV V+ +
Sbjct: 47 AFALIIVGGIMFILGFSGCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEA 106
Query: 101 ENARGGSVGALQSYYAMPDFEQFTASVDLAQTECCGMTDARNYDMSVW-QLRRLGPRGMA 159
A+ Y D + V + +CCG ++D +++ G
Sbjct: 107 VIVEKLQT-AVTKYRDNADLQNLIDGVQ-QEFKCCGAKGINDWDKNIYFNCSSPGSEACG 164
Query: 160 VPLSCCVQIEENISYLNPMPVNLSRCQEYQPNPVYRHVPGCIGKLEEWYQKQYFVL 215
VP SCC I++ I+ + S + + + GC+ +++W++ ++
Sbjct: 165 VPYSCC--IKDTINRQCGYGIRKSGTPTSDQSKII-FIGGCVNAVKDWFKSNMIII 217
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 33.5 bits (73), Expect = 0.22
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 107 SVGALQSYYAMPDFEQFTASVDLAQ--TECCGMTDARNYDMSVWQLRRLGPRGMAVPLSC 164
S LQ + T +D Q + CCG+TD R++ S W R+ G VP SC
Sbjct: 126 SASGLQLLSIYGEHPGVTEMIDNTQMGSMCCGVTDYRDWFTSGWAARQ-GVSN-RVPSSC 183
Query: 165 C-VQIEE---NISYLNPMPV-NLSRCQ--EYQPNPVYRHVPGCIGKLEEWYQKQYFVLML 217
C V + ++ NP+ V N+ C Y N R + G G L + VL L
Sbjct: 184 CKVPVPTCGWDMDVKNPVDVINIIGCSGLNYAQNDRLRVIGG--GGLGLAFVHLLSVLSL 241
Query: 218 SIFIFAVFKLGVL 230
IF F +G L
Sbjct: 242 IIFCFCFNTVGGL 254
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 133 ECCGMTDARNYDMS-VWQLRRLGPRGMAVPLSCCVQIEENISYLNPMPVNLSRCQEYQPN 191
+CCG D +++++ + + G +VP SCC +++ + S + ++ E
Sbjct: 189 KCCGFKDYNDWELNPYYSCKSNGYSRCSVPASCC-KLDISGSRCTLGVRDATKTSEIGQ- 246
Query: 192 PVYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVL 230
+ H GC+ +++WY+ + +L ++ + + +L
Sbjct: 247 --FIHKNGCLDTIKDWYKYTFILLSFALSFMSAAQTFIL 283
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 15/141 (10%)
Query: 36 PFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVW- 94
P+ + +++A G+ + + GC + L +F+++L LL E A VLA +
Sbjct: 51 PYATGSRLVIAVGVIIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAYNYR 110
Query: 95 -PRCLGLENAR------GGSVGALQSYYAMPDFEQFTASVDLAQ--TECCGMTDARNYDM 145
L ++ + AL+ Y + T + D Q +CCG+ +
Sbjct: 111 GKNSLNSDSVKVKDEIESDLTKALKGDYGSSGQDGVTKAFDALQEKQKCCGVNGYLD--- 167
Query: 146 SVWQLRRLGPRGMAVPLSCCV 166
W+ + VP SCCV
Sbjct: 168 --WKASKKYNGTSTVPDSCCV 186
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 43 VLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGLEN 102
+++AAG + +GC A L Y ++++ + + E A GV+A ++ + E
Sbjct: 62 LMIAAGCLVIIVCVVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYEL 121
Query: 103 ARGGSVGALQSYYAMPDFEQFTASVDLAQTECC 135
G + + Y D T ++D Q E C
Sbjct: 122 EVG--IRGKMNRYGFTD--AVTKAIDDLQKEGC 150
>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 39 YLALVLMAAGLTMCATAALGCWATYLP-GYAALSIYFLIVLSLLLCECAGGVLAAVW-PR 96
Y+ LVL G+ MC C LP Y +S+Y + VL +++ VL + P
Sbjct: 109 YIVLVLYVIGVPMCHVMTNDC----LPCRYIVMSVYIVFVLYIVMSVYIVFVLYVIGVPM 164
Query: 97 CLGLEN 102
CL L N
Sbjct: 165 CLVLTN 170
>SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 30.3 bits (65), Expect = 2.0
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 75 LIVLSLLLCECAGGVLAAV-WPRCLGLENARGGSVGALQSYYAMPDFEQFTASVDLAQTE 133
LI LS L C +L +V + R + N+ G G + Y S++L
Sbjct: 21 LIALSFL-CRRFRRLLDSVQFNRYVSFRNSWGVPEGMMCQYILK--HANILTSLNLCN-- 75
Query: 134 CCGMTDARNYDMSVWQLRRLGPRGMAVPLSCCVQIEENISYLNPM 178
C MT + + QL+ L RG ++PL C+++ E S+L +
Sbjct: 76 CYWMTSIGTTLLKLKQLKALDIRGCSLPLEICLKVVERNSHLTDL 120
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 30.3 bits (65), Expect = 2.0
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 17/193 (8%)
Query: 57 LGCWATYLPGYAALSIYFLIVLSLLLC-ECAGGVLAAVWPRCLGLENARGGSVGALQSYY 115
L C + Y +++++VL++L E G L+ + +E R A++ +
Sbjct: 3 LHCLSKYFIFTLNFIVWYMVVLAVLFTLEIIAGFLSFFF-----VEETRSKVSSAIKLFV 57
Query: 116 A-MPDFEQFTASVDLAQT--ECCGMTDARNYDMSVW-QLRRLGPRGMAVPLSCCVQIEEN 171
D ++D Q+ +CCG +++ + + VP SCCV E+
Sbjct: 58 VHYQDDLDLQNAIDGIQSNLKCCGGYSYHDWNHNKYFNCSAQAVEACGVPHSCCV--EDQ 115
Query: 172 ISYLNPMPVNLSRCQEYQPNPVYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLL 231
I+ V + + +Y V GC+ L +W + ++ F FA ++ +
Sbjct: 116 INTQCGFGVRREKSVLEASSVIY--VRGCVDSLSDWMVENLHIIGGLAFGFAAIQMRI-- 171
Query: 232 STVFSCIRLRQRR 244
T S +L Q R
Sbjct: 172 -TTLSTRKLTQMR 183
>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
Length = 864
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 221 IFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHATNENMYGSGVRED 271
I A+ KLG + + V + ++ R+ V+H+ T + T+ N Y RE+
Sbjct: 668 ILALEKLGAVFNQVATPLKYTPRKFVIHSPTNTLVVIETDHNTYTDAAREE 718
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 167 QIEENISYLNPMPVNLSRCQEYQPNPVYRHVPGC 200
++EEN YL + VN + Y +P Y+ P C
Sbjct: 748 EVEENACYLKKLEVNFTTLYRYL-SPAYKETPFC 780
>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
Length = 754
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1 CGFLEVVCGFLLLCDSKKILLSRLLASP 28
C F +V CG ++C+ ++ L+++L + P
Sbjct: 682 CFFAQVACGTAVICEIEEFLMTKLQSFP 709
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 43 VLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAV 93
+L+A G + A GC + L ++F+++L +L E A VL +
Sbjct: 409 LLIAVGCIITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYI 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.326 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,235,341
Number of Sequences: 59808
Number of extensions: 410097
Number of successful extensions: 1082
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 20
length of query: 302
length of database: 16,821,457
effective HSP length: 82
effective length of query: 220
effective length of database: 11,917,201
effective search space: 2621784220
effective search space used: 2621784220
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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