GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    25   3.5  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   3.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.6  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    24   4.6  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   8.0  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 235 FSCIRLRQRRQVLHTVTVKSIDHATNENMYGSGVREDHITAKYIQPDNYYSPRVRNPRIF 294
           F C+ +R     +H +  K    + ++  Y  G    HIT + I  + +Y+  V+NP   
Sbjct: 272 FGCLSVRMFYWCVHDLFAKV--QSNSQFKYPGG---HHITGQLIWREYFYTMSVQNPHYG 326

Query: 295 TSKPNEI 301
             + N I
Sbjct: 327 EMERNPI 333


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 213 FVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           F L++   I    +   LL T F+CI       V+ TV V +  H T
Sbjct: 276 FSLLVGHVITKTSEAVPLLGTYFNCIMFMVASSVVLTVVVLNYHHRT 322


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 230 LLSTVFSCIRLRQRRQVLHTVTVKSIDHAT 259
           LL T F+CI       V+ TV V +  H T
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHRT 322


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 35  PPFYYLALVLMAAGLTMC-ATAALGCWATYLPGYAA-LSIYFLI 76
           P F Y  + L   G   C A   L  W T L  +AA LS+Y ++
Sbjct: 604 PTFKYYNMWLSLLGAIFCIAVMFLISWPTALITFAAVLSLYLIV 647


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 6   VVCGFLLLCDSKKILLSRLLASP 28
           VVCGF  +  S  +L+ RL+  P
Sbjct: 822 VVCGFRSISYSVAVLMPRLIPHP 844


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,974
Number of Sequences: 2123
Number of extensions: 13148
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 516,269
effective HSP length: 64
effective length of query: 238
effective length of database: 380,397
effective search space: 90534486
effective search space used: 90534486
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 48 (23.4 bits)