Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
(302 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 59 4e-09
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin prot... 29 3.1
AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin prot... 29 3.1
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 29 4.1
AF043695-18|AAB97548.2| 710|Caenorhabditis elegans Hypothetical... 29 4.1
U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related... 29 5.4
Z48543-2|CAA88433.2| 478|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z49068-9|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 28 9.4
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 28 9.4
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 28 9.4
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 28 9.4
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 58.8 bits (136), Expect = 4e-09
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 16/240 (6%)
Query: 12 LLCDSKKILLSRLLASPESNLGHPPFYYLALVLMAAGLTMCATAALG-CWATYLPGYAAL 70
+L D K+ + L+ E++ P A V + G LG C A + L
Sbjct: 1 MLLDPKRNYILDLVHFSEND---PLLKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLL 57
Query: 71 SIYFLIVLSLLLCECAGGVLAAVWP-RCLGL-ENARGGSVGALQSYYAMPDFEQFTASVD 128
+ + + ++ L + A G L+ + + + EN R + P+ + T +D
Sbjct: 58 A-FVMFLIGTFLADVAMGTLSLFYKDKVYSVKENVREIVKSKYGVMTSEPENKMVTEFID 116
Query: 129 LAQ--TECCGMTDARNYDMSVW-QLRRLGPRGMAVPL---SCCVQIEENISYLNPMPVNL 182
Q +CCG +Y S W Q + PL SCC QI S LNP+ +
Sbjct: 117 KLQFYEKCCGSLGPTDYISSRWSQSTNQDSEEIESPLFPVSCCTQIT-GASALNPLAKSY 175
Query: 183 SRCQEYQPNPVYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAV-FKLGVLLS-TVFSCIRL 240
+RCQ+ N +RH GC +L W+ +Q ++ + F A+ LG+ LS + S IR+
Sbjct: 176 ARCQQIGANRQWRHAVGCSERLMSWFNEQIWIFVGFGFGSALTMMLGICLSCCLISKIRI 235
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 20/223 (8%)
Query: 44 LMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVWPRCLGLENA 103
L+ G GC + + L+ Y ++ LL+ E + GV A L
Sbjct: 88 LLIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLD-NYI 146
Query: 104 RGGSVGALQSYYAMPDFEQFTASVDLAQTECCGMTDARNYDMSVW---QLRRLG-PRGMA 159
R + Y PD + S+ CCG+ A ++D + + + R + P
Sbjct: 147 RNLLNDVVVGYRDDPDLQLLIDSMQETWM-CCGINGADDWDRNTYFSIEAREVASPEAGG 205
Query: 160 VPLSCCVQIE--ENISY-------LNP---MPVNLSRCQEYQPNPVYRHVPGCIGKLEEW 207
VP SCC+ E +Y L P M +L+ Q + + GC+ KL+ W
Sbjct: 206 VPFSCCINSSKLEFKNYFCGHGVRLKPESHMAAHLA-AQRVMAHTASIYTEGCLPKLQLW 264
Query: 208 YQKQYFVLMLSIFIFAVFK-LGVLLSTVFSCIRLRQRRQVLHT 249
++ +S+ I A+ + LG+ + L QR + +T
Sbjct: 265 LNNNMLLVAVSMVIIAIIQVLGICFAQNLKSDILAQRAKWYYT 307
>Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical
protein T23H4.1 protein.
Length = 483
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 193 VYRHVPGCIGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVFSCIRLRQRRQVL 247
V RH C+ + + +K +F+L L + ++ G +LS +F+ I QRRQ +
Sbjct: 290 VQRHTVQCVLVINIFTEKIFFILWLWYTMLSLISFGSILSWIFASIPFNQRRQFI 344
>AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin protein
18, isoform b protein.
Length = 412
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 208 YQKQYFVLMLSIFIFAVFKL----GVLLSTVFSCIR-LRQRRQVLHTVTVKSIDHATNEN 262
YQ+ + S++IFA+FKL G +S+V+ I+ L +L + + S ++
Sbjct: 173 YQRDHGARRHSVYIFAIFKLGKFYGAYVSSVYIFIKALHLANVILQFMLLNSFLQTSDYP 232
Query: 263 MYGSGVRED 271
M+G+ V D
Sbjct: 233 MFGAHVLYD 241
>AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin protein
18, isoform a protein.
Length = 436
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 208 YQKQYFVLMLSIFIFAVFKL----GVLLSTVFSCIR-LRQRRQVLHTVTVKSIDHATNEN 262
YQ+ + S++IFA+FKL G +S+V+ I+ L +L + + S ++
Sbjct: 173 YQRDHGARRHSVYIFAIFKLGKFYGAYVSSVYIFIKALHLANVILQFMLLNSFLQTSDYP 232
Query: 263 MYGSGVRED 271
M+G+ V D
Sbjct: 233 MFGAHVLYD 241
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 35 PPFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLL 82
P F L +++ AGL + A+ + TY Y LS + +L +LL
Sbjct: 361 PAFLLLVSIVLTAGLLVSIIIAVAVYETYEKWYLKLSNLSIAILIMLL 408
>AF043695-18|AAB97548.2| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 35 PPFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLL 82
P F L +++ AGL + A+ + TY Y LS + +L +LL
Sbjct: 361 PAFLLLVSIVLTAGLLVSIIIAVAVYETYEKWYLKLSNLSIAILIMLL 408
>U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related
family protein 1 protein.
Length = 956
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 27 SPESNLGHPPFYYLALVLMAAGLTMCATAALGCWATYLPGYAALSIY 73
SPE +G A+ + LT AT A+GC+ T LPG +Y
Sbjct: 387 SPEKRIGKT-LSEAAVAISITSLTDIATFAMGCYTT-LPGVQMFCMY 431
>Z48543-2|CAA88433.2| 478|Caenorhabditis elegans Hypothetical
protein C18D1.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 43 VLMAAGLTMCATAALGCWATYLPGYAALSIYFLIVLSLLLCECAGGVLAAVW 94
V+ GL AT A+ WA YL Y L++ FL + L G++ W
Sbjct: 111 VVTFVGLFSAATTAMIPWAAYLGFYPLLAMRFLQGIGLSTGFTLIGIVTRQW 162
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 201 IGKLEEWYQKQYFVLMLSIFIFAVFKLGVLLSTVF 235
+GKL + Q + V++L I +F +GV+ T F
Sbjct: 2 LGKLNRFLQLHWMVILLGIIFEILFTIGVVRLTYF 36
>Z49068-9|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 247 LHTVTVKSIDHATNENMYGSGVREDHIT 274
+HTVT +HA + YG VR+ ++T
Sbjct: 474 IHTVTELRNNHANGNSSYGVNVRKGYVT 501
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 176 NPMPVNLSRCQEYQPNPVYRHVPGCIG 202
N +PVN++R +E + + +VP C+G
Sbjct: 1368 NDLPVNVTRSRENETLHIATYVPKCVG 1394
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 176 NPMPVNLSRCQEYQPNPVYRHVPGCIG 202
N +PVN++R +E + + +VP C+G
Sbjct: 1368 NDLPVNVTRSRENETLHIATYVPKCVG 1394
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 247 LHTVTVKSIDHATNENMYGSGVREDHIT 274
+HTVT +HA + YG VR+ ++T
Sbjct: 474 IHTVTELRNNHANGNSSYGVNVRKGYVT 501
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,587,258
Number of Sequences: 27539
Number of extensions: 309570
Number of successful extensions: 883
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 18
length of query: 302
length of database: 12,573,161
effective HSP length: 81
effective length of query: 221
effective length of database: 10,342,502
effective search space: 2285692942
effective search space used: 2285692942
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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