GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001240-TA|BGIBMGA001240-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    29   2.9  
At2g37420.1 68415.m04589 kinesin motor protein-related                 29   3.8  
At1g08160.1 68414.m00900 harpin-induced protein-related / HIN1-r...    29   3.8  
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    28   6.7  
At3g01175.1 68416.m00022 expressed protein                             28   8.8  

>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 166 VQIEENISYLNPMPVNLSRCQEYQPNPVYRHVPGCIGKLEEWYQKQYF 213
           V++    S + P+P  + R  E    P        IG+ E WY   YF
Sbjct: 109 VEVPGAASAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYF 156


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 234 VFSCIRLRQRRQVLHTVTVKSIDHATN-ENMYGSGVREDHITAKYIQP 280
           V SC  +R+   VLHT+  K +D   N + ++G   ++  I  + I P
Sbjct: 70  VISCNEMRREVNVLHTIANKQVDRLFNFDKVFGPKSQQRSIYDQAIAP 117


>At1g08160.1 68414.m00900 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to hin1 [Nicotiana tabacum] GI:1619321
          Length = 221

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 15/90 (16%)

Query: 221 IFAVFKLGVL--LSTVFSCIRLRQRRQVLHTVTVKSIDHATNENMYGSGVREDHITAKY- 277
           I A+  LG+L  L+ + + + LR +R +++TV   S+        +  G  +DHI AK+ 
Sbjct: 41  IVALVLLGLLVGLAILITYLTLRPKR-LIYTVEAASVQE------FAIGNNDDHINAKFS 93

Query: 278 -----IQPDNYYSPRVRNPRIFTSKPNEII 302
                  P+ + S R  + RI T+  N+ +
Sbjct: 94  YVIKSYNPEKHVSVRYHSMRISTAHHNQSV 123


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 220 FIFAVFKLGVLLSTVFSCIRLRQRRQVLHTVTVKSID 256
           F+F + K+G ++    SC RL   R++ H +   S+D
Sbjct: 278 FLFGMLKVGTIIDIEISC-RLELERRIGHQLETASLD 313


>At3g01175.1 68416.m00022 expressed protein 
          Length = 401

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 256 DHATNENMYGSGVREDHITAKYIQPDNYY 284
           D  T EN+   GV +DH+  KY +   +Y
Sbjct: 245 DSVTIENIQTQGVEDDHVYKKYCERMRWY 273


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,919
Number of Sequences: 28952
Number of extensions: 286660
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 12,070,560
effective HSP length: 81
effective length of query: 221
effective length of database: 9,725,448
effective search space: 2149324008
effective search space used: 2149324008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)