Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0134 + 6954760-6955434 36 0.049
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 32 0.46
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244... 31 1.4
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 30 2.4
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 30 2.4
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 3.2
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 28 9.8
>05_02_0134 + 6954760-6955434
Length = 224
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 197 AGSEKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKK 243
AG E P + YH + H+T A +T +P +P SL A K R++
Sbjct: 97 AGGHDEALPRWPLYHLVSHLTGAAASFTPLPLIPSSLSSALKRARRQ 143
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 134 DSDDTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 185
+S D E NY RD+ +F+Y+L I+ VA + H + K +LY
Sbjct: 111 ESIDVESNNYSRDMFLFLYFLLII-----VAAMTSFKVHQDKSSFTGKSILY 157
>06_03_0881 -
25623679-25623843,25624104-25624195,25624287-25624446,
25624586-25624668,25624845-25624913,25625480-25625555,
25625645-25625895,25626387-25626537
Length = 348
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 146 DLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGSEKETNP 205
D++ F+ L+ ++R N IT P+ + K+ + A + I++ +KE
Sbjct: 213 DMVSFIRSLKAMVRASNAVAVITFPNTVLSSS-FCKRWQHLADTLLSIKAIPDEDKELAK 271
Query: 206 V---YKDYHGLFHITKL 219
+ Y+D G H+ K+
Sbjct: 272 LLTGYQDMVGFLHVHKV 288
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 161 KNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS-EKETNPVYKDYHGLFHITKL 219
K VA+ + L +DP + +L + A R+ FAG + ET +++ L H+
Sbjct: 737 KRVAMELQYMGPLNKDPALEYMLLQAVRFAFRMHQFAGGFDPETMDAFEELRNLVHVRNS 796
Query: 220 T 220
T
Sbjct: 797 T 797
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.9 bits (64), Expect = 2.4
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 13 LPPEDEKAPSTDAEKMKIAWRYEGL-SQVESSFGSNTNFGHNFDL--SRYID---ADTIE 66
LP E E PS A + + Y L S ++S F + F +F++ SR +D A+
Sbjct: 401 LPSELESNPSLQALRRMVTLGYNHLPSHLKSCFLYLSIFPEDFEIKRSRLVDRWIAEGFV 460
Query: 67 KSKIQYGTTTWQDS---TLSWQTTMRR------GKLKSALFHKLLRNIYETVLRSSGTNM 117
++K+ T DS L ++ ++R GK+KS H ++R+I TV S N
Sbjct: 461 RAKVGMTTKDVGDSYFNELINRSMIQRSRVGIEGKIKSCRVHDIMRDI--TVSISREENF 518
Query: 118 LRLAIH 123
+ L +H
Sbjct: 519 VFLPVH 524
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 37 LSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSA 96
L + E S+ S N H+ ++ + AD + +++D +SW +RR ++ +
Sbjct: 450 LCEKEISYSSAVNLPHSLEMLLELVADKNRSVVLAVAGASYRDMLMSWVCRLRRLRVTNF 509
Query: 97 LFHKLLRNIYE 107
+ L + YE
Sbjct: 510 VVCALDQETYE 520
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 SLTSELPQP-CALPPEDEKAPSTDAEKMKIAWRYEGLSQVESSFGSNTN 49
S +S LP+P CA PP D + D E ++ R +S GS N
Sbjct: 88 SPSSPLPRPICAWPPSDSEDDEDDLETLRAIQRRFSHYHSGTSSGSEMN 136
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,593
Number of Sequences: 37544
Number of extensions: 347618
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 8
length of query: 284
length of database: 14,793,348
effective HSP length: 81
effective length of query: 203
effective length of database: 11,752,284
effective search space: 2385713652
effective search space used: 2385713652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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