Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
         (284 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)     31   0.81 
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              29   4.3  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   29   5.7  
SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)                   29   5.7  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
          Length = 342

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 77  WQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNM------LRLAIHSLGSPIW 130
           W D+ L+W  T   G  +  L  KL+     +VL S+  +M      +RL I+S G  +W
Sbjct: 47  WNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLW 106

Query: 131 M 131
           M
Sbjct: 107 M 107


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 99  HKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNYGRDLIMFMYYLRIL 157
           H  L N+ E+ + SS  N+L+ A     +PI +       E  N  RD I  +  LR+L
Sbjct: 418 HTKLHNVMESSVNSSSENILKEAEEMEFAPIRIGNAVKRNEIINQCRDQIHKLVLLRVL 476


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 186 SAHNAVRIESFAGSEKET----NPVYKDYHGLFHITKLTALYTLVPFVPP 231
           S+HN   + S  GS  E     +PV+   H  F IT    +    P VPP
Sbjct: 809 SSHNIKELPSLLGSAPERTHHRSPVHNSNHENFKITDFNRIEKTPPSVPP 858


>SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 13 LPPEDEKAPSTDAEKMKIAWRYEGL--SQVESSFGSNTNFGHNFDLSRYIDADTIEKSK 69
          LP ED+KA ++  +++ I WR      S +       TN   NF + R I  D  ++ +
Sbjct: 16 LPQEDDKALASRVKELSIQWRAWACYRSSLPREEAECTNASCNFKVKRLIFLDDADEDR 74


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 252 PPELEETSEREQDDITATPSTACGGF 277
           PP    +S  E  D+TA+PS  C GF
Sbjct: 913 PPTGVTSSSGEAMDVTASPSAPCNGF 938


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,837,090
Number of Sequences: 59808
Number of extensions: 400387
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 16,821,457
effective HSP length: 81
effective length of query: 203
effective length of database: 11,977,009
effective search space: 2431332827
effective search space used: 2431332827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)