Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 38 0.001
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 31 0.19
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 27 2.3
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.3
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 27 2.3
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 3.1
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.0
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 26 5.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 7.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 7.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 9.3
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 38.3 bits (85), Expect = 0.001
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 26 EKMKIAWRYEGLSQVESSFGS--NTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLS 83
E+MKIAWRYE +S+ ++ + H+FDLS+ + I KS ++Y + +
Sbjct: 124 ERMKIAWRYEQVSKTKAPTLDMIPPGYTHSFDLSK----NLIVKSDMKYAVSPF------ 173
Query: 84 WQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNY 143
+ G A + L T+ + GT + RL + S+ SP + ++ + T Q++
Sbjct: 174 ---PLETGSNPYAPVIESLTRFLSTL--TPGT-VCRLVLPSILSPAFYSIRA--THPQHF 225
Query: 144 GRDLIMFMYYLRILIR---DKNVAVFITIPSHLYEDPIIMKKVLYSAHNAV-RIESFAGS 199
I F++ L LI+ ++ ++PS L+ L + +AV + F
Sbjct: 226 ----IRFIHTLSSLIKCTTSVHLICMCSVPSTLFSRDCEQIFWLENLASAVFSLHPFPVK 281
Query: 200 EKETNPVYKDYHGLFHITKL-TAL-YTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEE 257
E N + GLF I KL AL +T + DL+F + +++F IE +PP +E
Sbjct: 282 E-TVNGLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDE 340
Query: 258 TSE 260
+
Sbjct: 341 QKD 343
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 67 KSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHS 124
KS + T +S LSWQ ++R +K ++HK +N ++L S N R +H+
Sbjct: 9 KSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHK--KNDTSSLLDGSNKNTDRSILHT 64
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 218 KLTALYTLVP-FV----PPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDITATPS 271
K+ A Y LVP FV P L + + + K F + L+ PP+ ++ +++Q ATPS
Sbjct: 114 KVFAFYLLVPIFVVYKAAPLLKMLLQ-QLKNFKNQALNQPPQQQQQQQQQQHQQHATPS 171
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 74 TTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNM 117
T WQD WQ + R L++ + + + + +R+ T++
Sbjct: 591 TNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHL 634
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 57 SRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTN 116
S+++ + KS++ G W S S + K + + LL+ ++ V +
Sbjct: 325 SKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDNT 384
Query: 117 MLRLAIHSLGSPI 129
L +A H LG+ I
Sbjct: 385 SLAVACHDLGAYI 397
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 7 LPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDL--SRYIDADT 64
LP+ +P K+PST++ K+K A Y ++ +F N + + + A+
Sbjct: 58 LPKNEIMPKNGTKSPSTNSTKLKSAETYSSKNKWSMDCDEEFDFAANLEKFDKKQVFAEF 117
Query: 65 IEKSK 69
EK K
Sbjct: 118 REKDK 122
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 82 LSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAI 122
L+ +++ GK + + H++ RN+ +T+ + N+LR ++
Sbjct: 294 LASESSKSIGKKQRKVLHQVFRNVLQTIEEPNARNILRNSV 334
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 233 LDLAFKLKRKKFVIEKLHIPPELEETSE 260
LDL F ++ +V+E+L + EL+E+S+
Sbjct: 102 LDLIFNFEKAYYVMEELLLAGELQESSK 129
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 232 SLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDITATPS 271
SL A+K+ + ++ L +P E SE E D + PS
Sbjct: 204 SLIKAYKMAQSTPDLDSLSVPSSESEVSEEESDQEMSEPS 243
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 158 IRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESF 196
IR+K + + + + HLY D ++ + +L + + ++ +F
Sbjct: 292 IREKALLLALDLSKHLYHDKLVARTILANFRSDIKGTAF 330
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 9.3
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 104 NIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNYGRDLIMFMYYLRILIRDKNV 163
N YE+VLR +G N R S ++ + S + + R+L+ + + ++ D N
Sbjct: 49 NAYESVLRENGLNPAR--HRSYIRILYRLISSKKLSWNDEWRNLMRRIGFSQV-SSDLNT 105
Query: 164 AVFITIPSHLYEDPIIMKKVLY-SAHNAVRIESFAGSEKET 203
+F + + DP I+ Y S N + FA +T
Sbjct: 106 PLFPLNNTDMENDPFIVNGDDYRSRSNQQKSSQFASEVAQT 146
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,397,977
Number of Sequences: 5004
Number of extensions: 60265
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 11
length of query: 284
length of database: 2,362,478
effective HSP length: 72
effective length of query: 212
effective length of database: 2,002,190
effective search space: 424464280
effective search space used: 424464280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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