GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
         (284 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF324488-1|AAK49909.1|  314|Caenorhabditis elegans B0212.4-like ...    30   1.6  
AF045639-4|AAV58895.1|  313|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z83246-3|CAB05843.2|  292|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF003135-10|AAK18986.2|  183|Caenorhabditis elegans Hypothetical...    29   4.9  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    28   6.5  

>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 28/246 (11%)

Query: 21  PSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDS 80
           P+ +   MKIAWRY  + QV SS G  +N  + +D +++++   ++    +  T      
Sbjct: 106 PAENENSMKIAWRYGNVKQVSSSLGPLSN-ENQYDFTKHVENPNVDVYAEKVFTLKGIYE 164

Query: 81  TLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEF 140
           TL           KS                    N+LR+ + ++   I      +D +F
Sbjct: 165 TLCQIVKENEAHTKSG------------GRGGPKKNLLRVVLKNIDMEI-----CEDYKF 207

Query: 141 QNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNA-VRIESFAGS 199
              GR    F+  LR L R   + V+IT  S  +  P    ++L SA +  +++  F  +
Sbjct: 208 --LGR----FLCCLRSLARSSYMIVYITANS--FRVPKPTWRILESAADTHIQLMPFDEN 259

Query: 200 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKL-KRKKFVIEKLHIPPELEET 258
           EK+        HG FH+  L  L ++    PP LDL F+   RK F I  +H+PP  +E 
Sbjct: 260 EKKMFKHLGTAHGYFHLKSLPRLMSVGTHTPPILDLIFEASSRKGFQIRVMHLPPAFDEP 319

Query: 259 SEREQD 264
           +   Q+
Sbjct: 320 APGHQN 325


>AF324488-1|AAK49909.1|  314|Caenorhabditis elegans B0212.4-like
           protein protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 211 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 266
           +G+  +T    +Y+L P  PP+L    KL+++  V E L       E  E E+D+I
Sbjct: 251 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 304


>AF045639-4|AAV58895.1|  313|Caenorhabditis elegans Hypothetical
           protein B0212.4c protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 211 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 266
           +G+  +T    +Y+L P  PP+L    KL+++  V E L       E  E E+D+I
Sbjct: 250 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 303


>AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical
           protein B0212.4b protein.
          Length = 383

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 211 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 266
           +G+  +T    +Y+L P  PP+L    KL+++  V E L       E  E E+D+I
Sbjct: 320 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 373


>AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical
           protein B0212.4a protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 211 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 266
           +G+  +T    +Y+L P  PP+L    KL+++  V E L       E  E E+D+I
Sbjct: 319 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 372


>Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical
           protein B0024.3 protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 51  GHNFDLSRYIDADTIEKSKI-----QYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNI 105
           G  F + R   A T+  S +     + GT+ W+  T S   +      +S +F  L  + 
Sbjct: 36  GARFGVGRGGGASTVRGSSVYSGGFRTGTSGWKTGTSSSSNSYGSNSFRSTIFASLYSHA 95

Query: 106 YETVLRSSGTNMLRLAIHSLGSPI 129
           +  +   S TN   L I SL  PI
Sbjct: 96  HSPIFSHSLTN--ALIISSLARPI 117


>Z83246-3|CAB05843.2|  292|Caenorhabditis elegans Hypothetical
           protein ZK795.2 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 227 PFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQ 263
           P    S+D   K+   KF+     IP E  ET+ERE+
Sbjct: 146 PKTVKSMDQLIKILEPKFMAPLSRIPDEYPETAEREE 182


>AF003135-10|AAK18986.2|  183|Caenorhabditis elegans Hypothetical
           protein W03F11.3 protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 240 KRKKFVIEKLHIPPELEETSEREQDDI 266
           KR K  +E L +P E++ TSE+E   I
Sbjct: 112 KRLKLAVECLRVPDEIQPTSEKESRTI 138


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 1   MSLTSELPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQV---ESSFGSNTNFGHNFDLS 57
           +S  + LP PC LP E +K    + E+ K+   + GL  V   + +    +   HNF+  
Sbjct: 235 ISNVTSLPDPCPLPDEIKKRALNEKER-KVYAPFSGLGGVIYDKDAIYIESKNAHNFNRK 293

Query: 58  R 58
           R
Sbjct: 294 R 294


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,464,496
Number of Sequences: 27539
Number of extensions: 317453
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 11
length of query: 284
length of database: 12,573,161
effective HSP length: 81
effective length of query: 203
effective length of database: 10,342,502
effective search space: 2099527906
effective search space used: 2099527906
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)