GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.76 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.1  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   9.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 7/31 (22%), Positives = 19/31 (61%)

Query: 3    LTSELPQPCALPPEDEKAPSTDAEKMKIAWR 33
            LT  +    ++PPED +  +  ++ ++++W+
Sbjct: 1103 LTQTMEDVPSIPPEDVRCAALTSQSLQVSWQ 1133


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 7/31 (22%), Positives = 19/31 (61%)

Query: 3    LTSELPQPCALPPEDEKAPSTDAEKMKIAWR 33
            LT  +    ++PPED +  +  ++ ++++W+
Sbjct: 1099 LTQTMEDVPSIPPEDVRCAALTSQSLQVSWQ 1129


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 203 TNPVYKDYHGLFHITKLTALYTLV 226
           TN +Y  Y+G  H  +    YT+V
Sbjct: 359 TNYLYLTYNGTVHDVEFPGXYTMV 382


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 192 RIESFAGSEKETNPVYK 208
           RIE   G+E    PVYK
Sbjct: 76  RIEMLKGTELYVEPVYK 92


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 192 RIESFAGSEKETNPVYK 208
           RIE   G+E    PVYK
Sbjct: 76  RIEMLKGTELYVEPVYK 92


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,360
Number of Sequences: 429
Number of extensions: 3647
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)