GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001239-TA|BGIBMGA001239-PA|IPR008728|PAXNEB
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam pr...    57   2e-08
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    31   0.67 
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    31   0.88 
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    31   1.2  
At4g10760.1 68417.m01756 methyltransferase MT-A70, putative simi...    29   2.7  

>At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam
           profile PF05625: PAXNEB protein; similar to Paxneb
           protein (GI:10129788) [Mus musculus]; similar to PAX
           neighbour protein (GI:15887001) [Takifugu rubripes]
          Length = 355

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 28/252 (11%)

Query: 7   LPQPCALPPEDEKAPSTD-AEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTI 65
           LP P +   +   AP  D  E ++IAW+Y     +E+   +  ++ ++FD+ + ++   +
Sbjct: 103 LPHPASSKEDKPTAPDPDQGESLRIAWQYR--KYLENQKNAIDDYSNDFDMRKPLERQFL 160

Query: 66  EKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSL 125
               I    +    S LS    + +    + L  K  RN       S+  ++ R+AI S 
Sbjct: 161 SGRPIDC-VSLLDSSDLS----IAQDHCATFL-SKFPRN------SSNIASIGRIAIQSF 208

Query: 126 GSPIWMAMDSDDTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 185
            SP+         E+     D++ F+  L+ ++   N    +T P  L   P   K++ +
Sbjct: 209 CSPL--------CEYSEKESDMLSFIRLLKSMLMVSNAVAIVTFPPSLLS-PSSSKRLQH 259

Query: 186 SAHNAVRIESFAGSEKETNPV---YKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRK 242
            A   + I++    +KE   +   YKD +G  +I K+  + T VP +  +   +  LK++
Sbjct: 260 MADTLLSIKAIPDGDKELEKLLTGYKDINGFLNIHKVARINTQVPVILEAKTFSMSLKKR 319

Query: 243 KFV-IEKLHIPP 253
           +F+ +E L+  P
Sbjct: 320 RFLALECLNQAP 331


>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 141 QNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 185
           +NY RDL +F+Y L I+     V+   ++  H  + PI  K +LY
Sbjct: 131 KNYNRDLFLFLYCLLII-----VSAMTSLKKHNDKSPITGKSILY 170


>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 141 QNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 185
           +NY RDL +F+Y L I+     V+   ++  H  + PI  K +LY
Sbjct: 131 KNYNRDLFLFLYVLLII-----VSAMTSLRKHNDKSPISGKSILY 170


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 141 QNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 185
           +NY RDL +F++ L I+     V+   ++  H  + PI  K +LY
Sbjct: 61  KNYSRDLFLFLFCLLII-----VSAMTSLKKHTDKSPITGKSILY 100


>At4g10760.1 68417.m01756 methyltransferase MT-A70, putative similar
           to  (N6-adenosine)-methyltransferase [Mus musculus]
           GI:10179948, m6A methyltransferase (MT-A70) [Homo
           sapiens] GI:2460037; contains Pfam profile PF05063:
           MT-A70 (S-adenosylmethionine-binding subunit of human
           mRNA:m6A methyl-transferase (MTase))
          Length = 685

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 215 HITKLTALYTLVPFVPPSLDLAFKL 239
           H+  L++L ++VP + PSLDL+ KL
Sbjct: 31  HLDLLSSLQSIVPDIVPSLDLSLKL 55


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,122,763
Number of Sequences: 28952
Number of extensions: 299458
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 12,070,560
effective HSP length: 80
effective length of query: 204
effective length of database: 9,754,400
effective search space: 1989897600
effective search space used: 1989897600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)