GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
         (685 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   3.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   3.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   5.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   7.0  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   7.0  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/30 (26%), Positives = 21/30 (70%)

Query: 108 LKEPRNLNDTVDDAVNVINYYEEAVKNAED 137
           +K+P + ++TV D  N++++ + ++ NA +
Sbjct: 10  MKDPMSASETVQDHRNLLDWSKTSLDNATE 39


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/30 (26%), Positives = 21/30 (70%)

Query: 108 LKEPRNLNDTVDDAVNVINYYEEAVKNAED 137
           +K+P + ++TV D  N++++ + ++ NA +
Sbjct: 10  MKDPMSASETVQDHRNLLDWSKTSLDNATE 39


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 81  ILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAED 137
           I+  M +T +        R+     K   EP+N  D  DDA  +++  ++  K+ ED
Sbjct: 122 IITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDA--LVSDSDDREKDEED 176


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 66  FDILRRVMANYFGYDILYVMNITDIDDKIIK 96
           F I  + + +  G  + Y++ I   DDKI++
Sbjct: 359 FTIETKTVLDVLGVTVTYLIVIIQFDDKIVQ 389


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 66  FDILRRVMANYFGYDILYVMNITDIDDKIIK 96
           F I  + + +  G  + Y++ I   DDKI++
Sbjct: 285 FTIETKTVLDVLGVTVTYLIVIIQFDDKIVQ 315


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,019
Number of Sequences: 317
Number of extensions: 5940
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 685
length of database: 114,650
effective HSP length: 61
effective length of query: 624
effective length of database: 95,313
effective search space: 59475312
effective search space used: 59475312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)