Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 189 6e-48
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 181 1e-45
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 167 2e-41
09_04_0644 + 19181335-19184424 41 0.003
11_03_0031 - 9094643-9095824,9095945-9096034,9096141-9096216,909... 34 0.43
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554... 33 0.75
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 33 1.00
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 31 2.3
05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520 31 3.0
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 31 3.0
01_06_0611 + 30597855-30598189,30600818-30600995 31 3.0
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 31 4.0
01_07_0105 - 41104655-41104851,41105818-41107150 30 5.3
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 189 bits (461), Expect = 6e-48
Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 15/303 (4%)
Query: 205 TLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKIIAYIQKIISNGFAYESNGSVYFNVS 264
+L + + ++F DM L+ LPP V RVS+++ +II I++II N AY G VYF+V
Sbjct: 158 SLSKRYSDDFLSDMANLHCLPPSVEPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVE 217
Query: 265 EFDGNERHHYARLVPEAYGDTKSLQEGEGDLTDDAAEKRSPNDFALWKRSKAGEPSWDSP 324
F Y L D ++ GE D+ K++P DFALWK +K GEPSWDSP
Sbjct: 218 NFP-----EYGDLSGRKLDDNRA---GERVAVDE--RKKNPADFALWKAAKDGEPSWDSP 267
Query: 325 WGAGRPGWHIECSAMASDVCQNKLDIHTGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLH 384
WG GRPGWHIECSAM++ + DIH GG DL FPHH+NE+AQS A + +NY++H
Sbjct: 268 WGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLIFPHHENEIAQSRAACCDSS-INYWIH 326
Query: 385 TGHLMIAGCKMSKSLKNFITISDALKRHTARQLRFGFLLHGWKETLDYSENTMEMAIQTE 444
G + + KMSKSL NF+TI + + LR L ++ ++Y T+E
Sbjct: 327 NGFVNVNSQKMSKSLGNFVTIRKVTELYHPLALRMFLLGTHYRSPINY---TIEQLNVAS 383
Query: 445 KQFNEFFLTVKDALRSGYDEGCGGGWEPEEQRLFAKLSMAKEQVHAALCDNIDTRGAIDA 504
+ + T++D S G +P + ++ ++ D++ T A+ A
Sbjct: 384 DRLYYTYQTLQDCEESCQQHQSKAG-DPLPVNTTNCIQKLHDEFETSMSDDLHTSVALAA 442
Query: 505 LRE 507
+ E
Sbjct: 443 ISE 445
Score = 88.2 bits (209), Expect = 2e-17
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 21 LKLYNSLSRQKEEFIP-ANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGY 79
L LYN+ SR+KE F P G V Y CG T YD SH+GHAR+Y++FD+L R + Y +
Sbjct: 72 LHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYL-RYLDH 130
Query: 80 DILYVMNITDIDDKIIKRARQ 100
+ YV N TDIDDKII RA Q
Sbjct: 131 KVRYVRNFTDIDDKIIARANQ 151
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 181 bits (441), Expect = 1e-45
Identities = 102/237 (43%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 204 TTLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKIIAYIQKIISNGFAYESNGSVYFNV 263
T+L + NEF DM L LPP RV++++ II I KI+ NG AY G VYF+V
Sbjct: 95 TSLSSRFINEFLLDMAQLQCLPPTCEPRVTDHIEHIIELITKIMENGKAYAMEGDVYFSV 154
Query: 264 SEFDGNERHHYARLVPEAYGDTKSLQEGEGDLTDDAAEKRSPNDFALWKRSKAGEPSWDS 323
F Y L K G KR+P DFALWK +K GEP WDS
Sbjct: 155 DTFP-----EYLSL-----SGRKLDHNLAGSRVAVDTRKRNPADFALWKAAKEGEPFWDS 204
Query: 324 PWGAGRPGWHIECSAMASDVCQNKLDIHTGGVDLKFPHHDNELAQSEAHFDEPGWVNYFL 383
PWG GRPGWHIECSAM++ + DIH GG DL FPHH+NELAQS A + E V ++
Sbjct: 205 PWGRGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFPHHENELAQSRAAYPE-SEVKCWM 263
Query: 384 HTGHLMIAGCKMSKSLKNFITISDALKRHTARQLRFGFLLHGWKETLDYSENTMEMA 440
H G + KMSKS KNF TI D + + LRF + ++ +++S+ +E+A
Sbjct: 264 HNGFVNKDDQKMSKSDKNFFTIRDIIDLYHPMALRFFLMRTHYRGDVNHSDKALEIA 320
Score = 97.5 bits (232), Expect = 3e-20
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 16 KERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMAN 75
K P L+L+NS++++KE F P +V Y CG T YD SH+GHAR+Y++FD+L R +
Sbjct: 6 KPTPQLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYL-K 64
Query: 76 YFGYDILYVMNITDIDDKIIKRARQ 100
+ GY++ YV N TDIDDKIIKRA +
Sbjct: 65 FLGYEVEYVRNFTDIDDKIIKRANE 89
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 167 bits (407), Expect = 2e-41
Identities = 98/237 (41%), Positives = 133/237 (56%), Gaps = 15/237 (6%)
Query: 212 NEFHKDMKALNVLPPDVLTRVSEYVPKIIAYIQKIISNGFAYESNGSVYFNVSEFDGNER 271
+EFH+DM L LPP RV++++ +II I KI+ NG AY G VYF+V F
Sbjct: 114 DEFHRDMYELQCLPPTHEPRVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPD--- 170
Query: 272 HHYARLVPEAYGDTKSLQEGEGDLTDDAAEKRSPNDFALWKRSKAGEPSWDSPWGAGRPG 331
Y L K Q G A KR+P DFALWK +K GEPSW+SPWG GRPG
Sbjct: 171 --YLSL-----SGRKVDQNRPGTRVAVDARKRNPADFALWKSAKEGEPSWESPWGRGRPG 223
Query: 332 WHIECSAMASDVCQNKLDIHTGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLHTGHLMIA 391
WHIECSAM++ N DIH GG DL FPHH+NELAQS+A + E ++ + H L +
Sbjct: 224 WHIECSAMSAHYLGNIFDIHGGGKDLIFPHHENELAQSQAAYPESEIISLY-HPMALRL- 281
Query: 392 GCKMSKSLKNFITISDALKRHTARQLRFGF-LLHGWKETLD-YSENTMEMAIQTEKQ 446
M ++ + SD + + +L + + LH +ET+ Y E+ +E +I + Q
Sbjct: 282 -FLMRTHYRSDVNHSDTALQFASGRLYYIYQTLHDGEETVSLYGEHKLENSIPADDQ 337
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 21 LKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYD 80
L+L+++ ++ F P +V Y CG T YD SH+GHAR+Y++FD+L R + Y GY+
Sbjct: 22 LRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYL-KYLGYE 80
Query: 81 ILYVMNITDIDDKIIKRARQ 100
+ YV N TDIDDKIIKRA +
Sbjct: 81 VNYVRNFTDIDDKIIKRANE 100
>09_04_0644 + 19181335-19184424
Length = 1029
Score = 41.1 bits (92), Expect = 0.003
Identities = 25/71 (35%), Positives = 32/71 (45%)
Query: 349 DIHTGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISDA 408
DI G DL H + A E W F GHLM+ KMSKS NF T+ A
Sbjct: 674 DIRVSGKDLIQNHLTFSIYNHTALLPEHHWPRGFRCNGHLMLNSEKMSKSTGNFRTLRQA 733
Query: 409 LKRHTARQLRF 419
++ ++ RF
Sbjct: 734 IEEFSSDATRF 744
>11_03_0031 -
9094643-9095824,9095945-9096034,9096141-9096216,
9096759-9096976,9097283-9097512,9097617-9097683,
9097863-9098048,9098164-9098295,9098380-9098492,
9098771-9098777
Length = 766
Score = 33.9 bits (74), Expect = 0.43
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 79 YDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDP 138
Y+I + + TD + +I AR Y Y P D VD+A +++ ++NA+ P
Sbjct: 293 YEIHHKVQYTD--ESLIAAARLSYQYISDRFLPDKAIDLVDEAGSLVR-----LRNAQLP 345
Query: 139 DKKKLMQKTLDEIAASVKALKVAIESKDNER 169
D+ K ++K L +I A AI S+D E+
Sbjct: 346 DEAKELEKKLKKIMAEKSE---AIRSQDFEK 373
>12_01_0654 -
5542349-5542480,5542491-5542666,5542835-5542937,
5542971-5543084,5543104-5543163,5543258-5544316
Length = 547
Score = 33.1 bits (72), Expect = 0.75
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 84 VMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYE--EAVKNAEDPDKK 141
+ ++ D+ D + R + L + +L + R+ + +DA++ + YYE E K+ +D
Sbjct: 52 IQSVIDVADPDYIKERSEDL-DTWLWQLRDAVEKAEDAIDELEYYELKEKQKDLKDSHLG 110
Query: 142 KLMQKTLDEIAASVKALKVAIESKDN--ERIKNSRCDLLTSAK 182
K + SVK +K+ ++ D+ +R+K + DL +AK
Sbjct: 111 SSFAKMNHKFFQSVKHVKMLGKTSDSPLKRLKKAMEDLDEAAK 153
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 32.7 bits (71), Expect = 1.00
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 121 AVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSR-CDLLT 179
AV+ + ++ + E D + + + ++A +K ++ S+ +E+++N+R C L
Sbjct: 232 AVSYGSDQKDGAPHLELSDSPSIQSRKMGLLSALLKWNELDPPSR-SEQLRNNRVCSLYQ 290
Query: 180 SAKSPISDWLDYK---YGETVTDNAIFT-TLPRYWENEFHKDMK 219
++P D +Y +G ++ +++ T P W NEFH + K
Sbjct: 291 HNRNPFVDHPEYANLIWGNSLGESSSSVRTFPEAWVNEFHYENK 334
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 256 NGSVYFNVSEFDGNERHHYARLVPEAYGDTKSLQEGEG 293
+GS YFN+ G ER Y + P+ G QEG+G
Sbjct: 350 SGSYYFNIPAPPGAERTLYPSMDPQRMGALVKSQEGDG 387
>05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520
Length = 841
Score = 31.1 bits (67), Expect = 3.0
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 349 DIHTGGVDLKFPHHDNELAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISDA 408
D+ G DL H + + W F HL++ KMSKS NF T+ A
Sbjct: 692 DLRISGKDLMQNHLAFCIFNHTTLLPKHHWPRGFRCNRHLLLNSEKMSKSTGNFRTLRQA 751
Query: 409 LKRHTARQLRF 419
++ ++ RF
Sbjct: 752 IEEFSSDATRF 762
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 31.1 bits (67), Expect = 3.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 109 KEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAAS---VKALKVAIESK 165
+E N N+ +D VN + VK KKL + L + A +K LKVA+E+
Sbjct: 295 EESANDNELIDANVNTVKEMCVDVKQKHKTKVKKLCKTILRQAPAQSMKLKELKVAVEAH 354
Query: 166 DNERIKNSRC 175
N C
Sbjct: 355 SESMFSNFSC 364
>01_06_0611 + 30597855-30598189,30600818-30600995
Length = 170
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 99 RQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKAL 158
++K ++ + R+ ND +DD Y ++AVKN++ P + V+ L
Sbjct: 72 KKKASRPRFAFQTRSDNDILDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRL 131
Query: 159 --KVAIESKDNERIKNSRCDLLTSAKSPISDWLDY 191
+I E + N C+ L A +PI L +
Sbjct: 132 AKDTSIVVTTYEGVHNHPCEKLMEALTPILKQLQF 166
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 30.7 bits (66), Expect = 4.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 216 KDMKALNVLPPDVLTRVSEYVPKIIAYIQKIISNGFAY 253
KD++ L + D +T S+Y PK++ +K+I G AY
Sbjct: 262 KDIETLGI-KYDAVTYTSDYFPKLMEMAEKLIKQGKAY 298
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 30.3 bits (65), Expect = 5.3
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 105 EKYLKEPRNLNDTVDDAVNVINY--YEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAI 162
E+++KE + D +D + N +E +K ED +K K DE+ A+ ++ A+
Sbjct: 174 EEFVKEKEKITDAKNDVASTENVAAVDEKIKAEEDKNK----NKNDDEVVATA-TMEAAV 228
Query: 163 ESKDNE 168
E +D++
Sbjct: 229 EEEDDD 234
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,227
Number of Sequences: 37544
Number of extensions: 768470
Number of successful extensions: 1903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 18
length of query: 685
length of database: 14,793,348
effective HSP length: 87
effective length of query: 598
effective length of database: 11,527,020
effective search space: 6893157960
effective search space used: 6893157960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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