Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001238-TA|BGIBMGA001238-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR002308|Cysteinyl-tRNA
synthetase, class Ia
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0) 494 e-139
SB_24963| Best HMM Match : BSRF1 (HMM E-Value=2) 38 0.035
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 34 0.33
SB_26691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.1
SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.1
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 30 5.4
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 30 5.4
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 30 5.4
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 30 7.1
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.1
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 29 9.4
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9) 29 9.4
>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
Length = 583
Score = 494 bits (1218), Expect = e-139
Identities = 227/407 (55%), Positives = 295/407 (72%), Gaps = 20/407 (4%)
Query: 1 MSKRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHA 60
MS ++ P+W+ P + E LKLYNSL+R+K FIP+NG RV WYSCGPTVYDASHMGHA
Sbjct: 1 MSAKNLPSWNQPQGHGE---LKLYNSLTREKNLFIPSNGRRVTWYSCGPTVYDASHMGHA 57
Query: 61 RSYMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTVDD 120
RSY++FDI+RRV+ +YF YD+ VMN+TDIDDKII RAR+ +L EKY +E + + D
Sbjct: 58 RSYITFDIVRRVLQSYFNYDVFCVMNVTDIDDKIIHRARRNHLQEKYREENSDPKKILSD 117
Query: 121 AVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTS 180
+ Y + +++ +D DKK + K ++++ ++ L+ ++ + ++ +T
Sbjct: 118 IQVALQPYVKKMEDTKDEDKKNMFIKIIEKVQSTCGKLEALLQKGKADDVQ-----AVT- 171
Query: 181 AKSPISDWLDYKYGETVTDNAIFTTLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKII 240
++G VTD+ IF L +WE E+HKDM ALNVLP D+LT ++EYVP+++
Sbjct: 172 -----------QHGSDVTDHRIFAKLTEFWEQEYHKDMAALNVLPADILTNITEYVPEVV 220
Query: 241 AYIQKIISNGFAYESNGSVYFNVSEFDGNERHHYARLVPEAYGDTKSLQEGEGDLTDDAA 300
+I+K+I+NG+AYESNGSVYF+ +F +E+H YARLVPEA GD +L EGEG+L+ +
Sbjct: 221 TFIEKVIANGYAYESNGSVYFDTIKFGSSEKHSYARLVPEAVGDLDALAEGEGELSQNLG 280
Query: 301 EKRSPNDFALWKRSKAGEPSWDSPWGAGRPGWHIECSAMASDVCQNKLDIHTGGVDLKFP 360
EKRS DFALWK SK GEPSW+SPWG GRPGWH+ECS MASDV + +DIHTGGVDLKFP
Sbjct: 281 EKRSERDFALWKASKPGEPSWESPWGKGRPGWHVECSVMASDVLGSNIDIHTGGVDLKFP 340
Query: 361 HHDNELAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISD 407
HHDNELAQSEAHF WVNYFLH GHL I GCKMSKSLKNFITI D
Sbjct: 341 HHDNELAQSEAHFCVSQWVNYFLHAGHLTIEGCKMSKSLKNFITIKD 387
Score = 72.9 bits (171), Expect = 8e-13
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 11/212 (5%)
Query: 421 FLLHGWKETLDYSENTMEMAIQTEKQFNEFFLTVKDALRSGYDEGCGG-GWEPEEQRLFA 479
+ LH T++ + M +++ +FFL VKD LR + G + E+ L +
Sbjct: 361 YFLHAGHLTIEGCK--MSKSLKNFITIKDFFLAVKDILRKPEVKAPGSHNYHELEKDLQS 418
Query: 480 KLSMAKEQVHAALCDNIDTRGAIDALRELVCACHVYXX----XXXXXXXXXXXXXXXYVT 535
K K+ VH ALCD+IDT GA+ +++LV ++Y Y+T
Sbjct: 419 KFHEKKDGVHQALCDSIDTPGALRHMQDLVKLSNIYISNKKQRNESANKQLLEGVAKYIT 478
Query: 536 DVLHVFGVVEGPR-GGIGFPVGDADGVSLEETVMPYLEALSAFXXXXXXXXXXXXXXXXL 594
+L +FG EG + G G V + G +E++M L L
Sbjct: 479 QMLKIFGANEGVQLIGFGSAVQQSGGNDSKESIM-LAANLRLLCDYFLFVLYCSLVPRIL 537
Query: 595 ALCDALRDRVLPDLGVRLEDK--PDRTVVKLV 624
CD LRD L D+GV LED+ + V+K V
Sbjct: 538 KACDDLRDNKLVDVGVLLEDQEGDQKAVIKFV 569
>SB_24963| Best HMM Match : BSRF1 (HMM E-Value=2)
Length = 250
Score = 37.5 bits (83), Expect = 0.035
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 348 LDIHTGGVDLKFPHHDNELAQSEAHF---DEPGWVNYFLHTGHLMIAGCKMSKSLKNFIT 404
+D+ G DL P+H + ++ W GHL++ KMSKS NF+T
Sbjct: 13 VDLRVSGKDL-VPNHLTYYLYNHCAIWPNEKSKWPKGVRANGHLLLNSEKMSKSTGNFLT 71
Query: 405 ISDALKRHTARQLRFGFLLHG-WKETLDYSENTMEMAIQTEKQFNEF---FLTVKDALRS 460
+ A+ + ++ +R G E ++ E + I F+E+ + KD LR+
Sbjct: 72 LRQAINKFSSDGMRLALADAGDTLEDANFVEKMADAGILRLYTFHEWIREMIASKDQLRT 131
Query: 461 G 461
G
Sbjct: 132 G 132
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 34.3 bits (75), Expect = 0.33
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 89 DIDDKIIKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDPDKKKLMQKTL 148
++DD +R + EK +KE LND +++ +Y + +K + +K+K M+ +
Sbjct: 583 ELDDVSTRRNELQKKQEKIIKENDELNDRINELKKENDYLAKEIK--DFANKRKEMETSY 640
Query: 149 DE---IAASVKALKVAIESKDNERIKNSRCDLLTSAKSPISD 187
+E + KA+ +E D ++ KNS +T S + D
Sbjct: 641 EEKERERQTEKAMGQLVEELDIQKTKNSE---MTETASGLKD 679
>SB_26691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 30.7 bits (66), Expect = 4.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 597 CDALRDRVLPDLGVRLEDKPDRTVVKLVS 625
CD +R+R+ P L RLE R VKLV+
Sbjct: 8 CDVVRNRIGPTLSKRLETLQSRRAVKLVT 36
>SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 30.7 bits (66), Expect = 4.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 366 LAQSEAHFDEPGWVNYFLHTGHLMIAGCKMSKSLKNFITISDALKRHTARQLR 418
L S A FD+P + N ++ L G KMSK KN+ + + +H + LR
Sbjct: 471 LVISTALFDKPPFKNLIVNGLVLAADGAKMSKRKKNYPDPMEIINKHGSDALR 523
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/77 (20%), Positives = 27/77 (35%)
Query: 300 AEKRSPNDFALWKRSKAGEPSWDSPWGAGRPGWHIECSAMASDVCQNKLDIHTGGVDLKF 359
+++ S + + W PS + P H + A + K G + +
Sbjct: 495 SQQASASSMSAWPHPNMPGPSGEKTGSTSPPEGHNDRYARLNKPSNGKFSYENPGYEAQG 554
Query: 360 PHHDNELAQSEAHFDEP 376
HH EL AH +P
Sbjct: 555 EHHYQELEHPSAHHPQP 571
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 30.3 bits (65), Expect = 5.4
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 178 LTSAKSPISDWLDYKYGETVT-DNAIFTTLPRYWENEFHKDMK--ALNVLPPDVLTRVSE 234
L+SA + W+ G+ V+ A+ TL R W+ +F +D+ L + ++L + SE
Sbjct: 316 LSSALELLEIWISSNTGQLVSHPAAVCQTLLR-WD-QFSEDVMPLLLEICQRELLKKSSE 373
Query: 235 YVPKIIAYIQKIISNGFAYESNGSVYFNVSEFDGNE 270
V ++I + +++ +G E G V + GN+
Sbjct: 374 -VEEVIFLLAEVVLSGLLTEQGGPVSVESKKAHGNK 408
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 30.3 bits (65), Expect = 5.4
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 126 NYYEEAVKNAEDPDKKKL----MQKTLDEIAASVK--ALKVAIESKD-NERIKNSRCDLL 178
N +E +K ED DKKK ++KT + + +K ALK IE +ER+ +S C L+
Sbjct: 574 NVAKEGLKIGEDSDKKKKKFEELEKTYEPLLKWLKEDALKDQIEKATISERLHDSPCALV 633
Query: 179 TSA 181
S+
Sbjct: 634 ASS 636
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 30.3 bits (65), Expect = 5.4
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 80 DILYVMNITDIDDKI-IKRARQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAEDP 138
D LYV D +K+ + R + + +K L + V E K AE+
Sbjct: 160 DQLYVF--ADSKEKVQVSRQHENQATTRMIKPQWGLTSFDNKTVAFKTLTESIGKEAEEI 217
Query: 139 DKKKLMQKTLDEIAASVKALKVAIE---SKDNERIKNSRCDLLTSAKSPISDWLDYKYGE 195
+K+ L+QKT+D V + + S ++ER+ N K+P S +D
Sbjct: 218 EKEVLVQKTVDHANGEVVNASLECDDRSSGNDERVSNEHS---RRDKTP-SRIID---SS 270
Query: 196 TVTDNAIFTTLPRYWENEFHKDMKALNVLPPDVLTRVSEYVPKIIAYIQKIISNGFAYES 255
++TD ++ T E++ K K +NV+ V + ++ +P+ I S G Y S
Sbjct: 271 SITDQSLPRTPENLGESDIKKKEK-MNVIVNGVDVQ-TQTLPQPYGQINAHDSGGTGYIS 328
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 208 RYWENEFHKDMKA----LNVLPPDVLTRVSEYVPKIIAYIQKII 247
RY+E ++ D A + PP VLTR +YV ++ ++I + +
Sbjct: 1398 RYFEKDWMSDKYAGGCYVGTFPPGVLTRYGKYVKELFSFISEFL 1441
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 29.9 bits (64), Expect = 7.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 282 YGDTKSLQEGEGDLTDDAAEKRSPNDFALWKRSKAGEPSWD 322
Y DT S EGE D D+ A++R+ L +S+ E + D
Sbjct: 969 YSDTSSGSEGESDSRDNRAKERASEKSKLSDKSRTSENTPD 1009
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 99 RQKYLYEKYLKEPRNLNDTVDDAVNVINYYEEAVKNAE----DPDKKKLMQKTLDEIAAS 154
RQK L EK LK+ + +++ N + +E V++ + DP+K + K DEI
Sbjct: 1348 RQKQL-EKALKDAEKFDAVLEEIENWLPAEQELVQSLQPISSDPEKIRAQVKETDEILED 1406
Query: 155 VKALKVAI 162
VK V +
Sbjct: 1407 VKGYVVRL 1414
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.5 bits (63), Expect = 9.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 118 VDDAVNVINYYEEAVKNAEDPDKKKLMQKTLDEIAASVKAL-KVAIESKDNERIKN 172
VDD + +N E K D KKKL K + + + K L + ++++D E + N
Sbjct: 415 VDDDEDSVNDEENNSKTGNDLYKKKLYHKAFTKYSRATKLLEECRLQNEDEENMMN 470
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.5 bits (63), Expect = 9.4
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 129 EEAVKNAEDPDKKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTSAKSP 184
E A K A+ ++K +QK L++ AA + +K +S+D E+ K S+ + + KSP
Sbjct: 93 EMAEKKAKAKERK--LQKQLEKEAAEEEKVKKPKKSRDGEKTKKSK-KVTSEPKSP 145
>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 425 GWKETLDYSENTMEMAIQTEKQFNEFFLTVKDALRSGYDEGCGGGWEPEE-QRLFAKLSM 483
G + L + E AI+ E Q N L V + DE GGG + EE +R K
Sbjct: 33 GSDKQLSFLEEDKHHAIRLEDQMNNEHLEVLQRIFEEADEDGGGGLDYEEFRRAMIKTMS 92
Query: 484 AKE 486
KE
Sbjct: 93 CKE 95
>SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)
Length = 159
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 140 KKKLMQKTLDEIAASVKALKVAIESKDNERIKNSRCDLLTSAKSPISDWLDYKYGETVTD 199
KKK +K ++ A KA++ ES D+E + D++ D +Y Y ET +
Sbjct: 96 KKKKKKKIAIDVEAEAKAIENGTESGDDEVQGDDGDDIMA------LDDREYSYEETSST 149
Query: 200 NAIFTTLP 207
FT LP
Sbjct: 150 TQTFTGLP 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,428,531
Number of Sequences: 59808
Number of extensions: 867467
Number of successful extensions: 1981
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1967
Number of HSP's gapped (non-prelim): 22
length of query: 685
length of database: 16,821,457
effective HSP length: 87
effective length of query: 598
effective length of database: 11,618,161
effective search space: 6947660278
effective search space used: 6947660278
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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